Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QYM22_RS21865 Genome accession   NZ_CP129342
Coordinates   4169421..4169762 (-) Length   113 a.a.
NCBI ID   WP_046130154.1    Uniprot ID   A0AAE2JWL3
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4164421..4174762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS21835 (QYM22_21835) srlD 4165053..4165838 (-) 786 WP_046130148.1 sorbitol-6-phosphate dehydrogenase -
  QYM22_RS21840 (QYM22_21840) - 4165856..4166221 (-) 366 WP_046130149.1 PTS glucitol/sorbitol transporter subunit IIA -
  QYM22_RS21845 (QYM22_21845) - 4166237..4167244 (-) 1008 WP_046130150.1 PTS glucitol/sorbitol transporter subunit IIB -
  QYM22_RS21850 (QYM22_21850) - 4167261..4167809 (-) 549 WP_046130151.1 PTS glucitol/sorbitol transporter subunit IIC -
  QYM22_RS21855 (QYM22_21855) - 4167806..4168243 (-) 438 WP_046130152.1 transcriptional regulator GutM -
  QYM22_RS21860 (QYM22_21860) - 4168240..4169202 (-) 963 WP_046130153.1 sugar-binding transcriptional regulator -
  QYM22_RS21865 (QYM22_21865) ssbB 4169421..4169762 (-) 342 WP_046130154.1 single-stranded DNA-binding protein Machinery gene
  QYM22_RS21870 (QYM22_21870) - 4169865..4170239 (-) 375 WP_046130155.1 hypothetical protein -
  QYM22_RS21875 (QYM22_21875) - 4170415..4170828 (+) 414 WP_046130156.1 YwpF-like family protein -
  QYM22_RS21880 (QYM22_21880) mscL 4170862..4171248 (-) 387 WP_046130157.1 large conductance mechanosensitive channel protein MscL -
  QYM22_RS21885 (QYM22_21885) fabZ 4171318..4171752 (-) 435 WP_046130158.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QYM22_RS21890 (QYM22_21890) - 4171924..4172751 (-) 828 WP_046130159.1 flagellar hook-basal body protein -
  QYM22_RS21895 (QYM22_21895) - 4172780..4173619 (-) 840 WP_046130160.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12596.33 Da        Isoelectric Point: 9.1364

>NTDB_id=852516 QYM22_RS21865 WP_046130154.1 4169421..4169762(-) (ssbB) [Bacillus glycinifermentans strain SRCM12603]
MFNHIMLVGRLTKDPELRYTSDGVPVANITLAVSRHFKNAAGDIETDFINCTLWRKTAENTADYCRKGSIVGLNGRLQTR
SYVNSEGNRVFITEVVARSVHFLGGKPREPADV

Nucleotide


Download         Length: 342 bp        

>NTDB_id=852516 QYM22_RS21865 WP_046130154.1 4169421..4169762(-) (ssbB) [Bacillus glycinifermentans strain SRCM12603]
ATGTTTAACCACATTATGCTGGTCGGGCGTTTAACGAAGGACCCGGAGCTTCGGTATACATCTGACGGTGTCCCCGTTGC
CAATATCACCCTGGCCGTCAGCAGGCATTTCAAAAATGCCGCGGGCGACATTGAAACGGATTTCATCAATTGCACGCTGT
GGAGAAAAACGGCTGAAAACACAGCCGATTACTGCAGAAAAGGTTCAATCGTCGGATTGAACGGCAGACTTCAAACGCGC
AGCTATGTAAATTCAGAAGGGAACCGCGTCTTTATAACAGAAGTCGTCGCCCGCTCCGTTCATTTTTTGGGCGGGAAACC
CCGCGAGCCCGCAGATGTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

68.468

98.23

0.673
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.377

93.805

0.566
  ssb Latilactobacillus sakei subsp. sakei 23K

56.311

91.15

0.513
  ssb Vibrio cholerae strain A1552

38.596

100

0.389
  ssbA Streptococcus mutans UA159

39.815

95.575

0.381
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39.815

95.575

0.381
  ssbB Lactococcus lactis subsp. cremoris KW2

39.048

92.92

0.363
  ssbB/cilA Streptococcus mitis NCTC 12261

37.963

95.575

0.363
  ssbB/cilA Streptococcus pneumoniae TIGR4

37.963

95.575

0.363