Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | LLUC320_RS02025 | Genome accession | NZ_CP129095 |
| Coordinates | 404946..405335 (+) | Length | 129 a.a. |
| NCBI ID | WP_021165898.1 | Uniprot ID | A0A166Z4Y5 |
| Organism | Lactococcus cremoris strain UC320 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 399946..410335
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLUC320_RS02000 (LLUC320_02010) | pepA | 400805..401872 (-) | 1068 | WP_021165896.1 | glutamyl aminopeptidase | - |
| LLUC320_RS02005 (LLUC320_02015) | - | 401975..402259 (+) | 285 | WP_011675459.1 | hypothetical protein | - |
| LLUC320_RS02010 (LLUC320_02020) | - | 402304..402621 (+) | 318 | WP_011675460.1 | thioredoxin family protein | - |
| LLUC320_RS02015 (LLUC320_02025) | ytpR | 402727..403353 (+) | 627 | WP_011675461.1 | YtpR family tRNA-binding protein | - |
| LLUC320_RS02020 (LLUC320_02030) | nox | 403515..404855 (+) | 1341 | WP_021216210.1 | H2O-forming NADH oxidase | - |
| LLUC320_RS02025 (LLUC320_02035) | ssbB | 404946..405335 (+) | 390 | WP_021165898.1 | single-stranded DNA-binding protein | Machinery gene |
| LLUC320_RS02030 (LLUC320_02040) | groES | 405454..405738 (+) | 285 | WP_011675464.1 | co-chaperone GroES | - |
| LLUC320_RS02035 (LLUC320_02045) | groL | 405825..407453 (+) | 1629 | WP_021213999.1 | chaperonin GroEL | - |
| LLUC320_RS02040 (LLUC320_02050) | - | 407505..408317 (-) | 813 | WP_011675466.1 | MBL fold metallo-hydrolase | - |
| LLUC320_RS02045 (LLUC320_02055) | - | 408507..409934 (-) | 1428 | WP_011675468.1 | cell wall metabolism sensor histidine kinase WalK | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14703.77 Da Isoelectric Point: 6.9865
>NTDB_id=850816 LLUC320_RS02025 WP_021165898.1 404946..405335(+) (ssbB) [Lactococcus cremoris strain UC320]
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIILWGKSAETFVSYAKKGSLISVEGEIRTRN
YTDKNEQKHCITEILGLSYDLLESRATLALRESAVNFEELLLEADELPF
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIILWGKSAETFVSYAKKGSLISVEGEIRTRN
YTDKNEQKHCITEILGLSYDLLESRATLALRESAVNFEELLLEADELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=850816 LLUC320_RS02025 WP_021165898.1 404946..405335(+) (ssbB) [Lactococcus cremoris strain UC320]
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTCGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTCGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
96.899 |
100 |
0.969 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
60 |
100 |
0.605 |
| ssbA | Streptococcus mutans UA159 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis SK321 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
55.385 |
100 |
0.558 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
41.964 |
86.822 |
0.364 |