Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LC087_RS12045 Genome accession   NZ_CP129013
Coordinates   2367276..2367629 (-) Length   117 a.a.
NCBI ID   WP_226543060.1    Uniprot ID   -
Organism   Bacillus carboniphilus strain SaN35-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2362276..2372629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC087_RS12025 (LC087_12025) - 2363558..2364163 (-) 606 WP_226543068.1 DedA family protein -
  LC087_RS12030 (LC087_12030) - 2364513..2365823 (-) 1311 Protein_2377 hemolysin family protein -
  LC087_RS12035 (LC087_12035) - 2366185..2366406 (-) 222 WP_226543065.1 hypothetical protein -
  LC087_RS12040 (LC087_12040) - 2366382..2366600 (-) 219 WP_226543062.1 hypothetical protein -
  LC087_RS12045 (LC087_12045) ssbB 2367276..2367629 (-) 354 WP_226543060.1 single-stranded DNA-binding protein Machinery gene
  LC087_RS12050 (LC087_12050) - 2368043..2368492 (+) 450 WP_226543058.1 YwpF-like family protein -
  LC087_RS12055 (LC087_12055) - 2368896..2369615 (+) 720 WP_226543054.1 alpha/beta fold hydrolase -
  LC087_RS12060 (LC087_12060) - 2369675..2369911 (+) 237 WP_226543052.1 hypothetical protein -
  LC087_RS12065 (LC087_12065) fabZ 2370040..2370468 (-) 429 WP_226543050.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LC087_RS12070 (LC087_12070) - 2370481..2370759 (-) 279 WP_306019609.1 DNA-directed RNA polymerase subunit beta -
  LC087_RS12075 (LC087_12075) - 2370778..2371575 (-) 798 WP_226543046.1 flagellar hook-basal body protein -
  LC087_RS12080 (LC087_12080) - 2371587..2372399 (-) 813 WP_226543044.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 117 a.a.        Molecular weight: 13036.71 Da        Isoelectric Point: 8.4923

>NTDB_id=850527 LC087_RS12045 WP_226543060.1 2367276..2367629(-) (ssbB) [Bacillus carboniphilus strain SaN35-3]
MINEVILVGRLTRDPDLRYTPEGKAVVNMNLAVSRSFRSHAGIIESDFVNCTVWGRTAENTANYCQKASVIGVTGRIQTR
NYQNAEGKKVYVTEVVAESVRFMSSPNHQQSSKELAE

Nucleotide


Download         Length: 354 bp        

>NTDB_id=850527 LC087_RS12045 WP_226543060.1 2367276..2367629(-) (ssbB) [Bacillus carboniphilus strain SaN35-3]
TTGATTAATGAAGTGATATTAGTTGGAAGATTGACGAGAGACCCTGATTTAAGGTATACCCCCGAAGGGAAAGCTGTTGT
CAATATGAACTTAGCTGTTAGTCGATCGTTCCGCAGTCATGCCGGTATTATTGAAAGCGACTTTGTGAATTGTACAGTTT
GGGGGAGAACGGCTGAAAATACGGCGAACTATTGTCAAAAAGCATCTGTTATAGGGGTGACAGGAAGAATTCAAACACGC
AATTATCAAAATGCGGAAGGTAAAAAAGTGTACGTAACAGAAGTAGTCGCTGAATCTGTTCGCTTTATGAGCTCGCCAAA
TCATCAACAATCCTCGAAAGAATTAGCAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.714

95.726

0.581
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.009

91.453

0.521
  ssb Latilactobacillus sakei subsp. sakei 23K

54.286

89.744

0.487
  ssbA Streptococcus mutans UA159

42.857

89.744

0.385
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.905

89.744

0.376
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.905

89.744

0.376
  ssbB/cilA Streptococcus pneumoniae Rx1

40.952

89.744

0.368
  ssbB/cilA Streptococcus pneumoniae D39

40.952

89.744

0.368
  ssbB/cilA Streptococcus pneumoniae R6

40.952

89.744

0.368
  ssbB/cilA Streptococcus mitis SK321

40.952

89.744

0.368