Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | QU579_RS03030 | Genome accession | NZ_CP128803 |
| Coordinates | 621381..621818 (-) | Length | 145 a.a. |
| NCBI ID | WP_021453050.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain NJIFDCVp52 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 616381..626818
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QU579_RS03010 (QU579_03010) | coaE | 616888..617502 (-) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
| QU579_RS03015 (QU579_03015) | pilD | 617503..618372 (-) | 870 | WP_342821214.1 | A24 family peptidase | Machinery gene |
| QU579_RS03020 (QU579_03020) | pilC | 618437..619660 (-) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| QU579_RS03025 (QU579_03025) | pilB | 619684..621369 (-) | 1686 | WP_342821213.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| QU579_RS03030 (QU579_03030) | pilA | 621381..621818 (-) | 438 | WP_021453050.1 | pilin | Machinery gene |
| QU579_RS03035 (QU579_03035) | nadC | 622081..622968 (-) | 888 | WP_140260936.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| QU579_RS03040 (QU579_03040) | ampD | 623061..623612 (+) | 552 | WP_342821221.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| QU579_RS03045 (QU579_03045) | pdhR | 624018..624785 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 14854.00 Da Isoelectric Point: 9.7639
>NTDB_id=849645 QU579_RS03030 WP_021453050.1 621381..621818(-) (pilA) [Vibrio parahaemolyticus strain NJIFDCVp52]
MKQSKQKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAASALASITGHRINVETYVVENGSFPTTAQLPVPTSP
LGVVSYTASASGAGASSGAIKFTFNSTGVSPDVISKDVTLGRDGTGQWSCTSGITATGVKPKACS
MKQSKQKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAASALASITGHRINVETYVVENGSFPTTAQLPVPTSP
LGVVSYTASASGAGASSGAIKFTFNSTGVSPDVISKDVTLGRDGTGQWSCTSGITATGVKPKACS
Nucleotide
Download Length: 438 bp
>NTDB_id=849645 QU579_RS03030 WP_021453050.1 621381..621818(-) (pilA) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGAAACAGAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAACTGATGATTGTGGTAGCGGTAATTGGTGTTTT
AGCTGCAATTGCAGTTCCACAATACCAAAAATATGTAGCTAAAAGTGAGGCAGCGTCTGCACTAGCCTCCATCACTGGGC
ATAGAATAAATGTTGAGACTTATGTTGTTGAAAATGGCTCATTTCCAACAACGGCCCAGCTGCCAGTTCCGACTTCTCCA
CTTGGTGTAGTTAGCTATACAGCTTCAGCTTCAGGAGCAGGTGCATCGTCAGGTGCAATAAAATTCACATTTAATAGCAC
AGGTGTAAGTCCAGACGTTATAAGTAAGGACGTGACTCTAGGGCGTGATGGAACAGGTCAATGGAGCTGTACCTCTGGTA
TTACTGCTACAGGTGTAAAACCTAAAGCATGCTCTTAA
ATGAAACAGAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAACTGATGATTGTGGTAGCGGTAATTGGTGTTTT
AGCTGCAATTGCAGTTCCACAATACCAAAAATATGTAGCTAAAAGTGAGGCAGCGTCTGCACTAGCCTCCATCACTGGGC
ATAGAATAAATGTTGAGACTTATGTTGTTGAAAATGGCTCATTTCCAACAACGGCCCAGCTGCCAGTTCCGACTTCTCCA
CTTGGTGTAGTTAGCTATACAGCTTCAGCTTCAGGAGCAGGTGCATCGTCAGGTGCAATAAAATTCACATTTAATAGCAC
AGGTGTAAGTCCAGACGTTATAAGTAAGGACGTGACTCTAGGGCGTGATGGAACAGGTCAATGGAGCTGTACCTCTGGTA
TTACTGCTACAGGTGTAAAACCTAAAGCATGCTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.711 |
100 |
0.49 |
| pilA | Vibrio cholerae strain A1552 |
46.711 |
100 |
0.49 |
| pilA | Vibrio cholerae C6706 |
46.711 |
100 |
0.49 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.953 |
100 |
0.441 |
| pilA | Pseudomonas aeruginosa PAK |
41.447 |
100 |
0.434 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.781 |
100 |
0.421 |
| pilA | Acinetobacter baumannii strain A118 |
42.336 |
94.483 |
0.4 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
37.671 |
100 |
0.379 |