Detailed information NTG0849642

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QU579_RS03015
• Genome accession: NZ_CP128803
• Coordinates: 617503..618372 (-)
• Length: 289 a.a.
• NCBI ID: WP_342821214.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain NJIFDCVp52
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 612503..623372

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QU579_RS02980 (QU579_02980)	rpsP	613496..613744 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
QU579_RS02985 (QU579_02985)	rimM	613773..614321 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
QU579_RS02990 (QU579_02990)	trmD	614349..615092 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
QU579_RS02995 (QU579_02995)	rplS	615134..615487 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
QU579_RS03000 (QU579_03000)	yacG	615857..616051 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
QU579_RS03005 (QU579_03005)	zapD	616120..616860 (-)	741	WP_005480890.1	cell division protein ZapD	-
QU579_RS03010 (QU579_03010)	coaE	616888..617502 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
QU579_RS03015 (QU579_03015)	pilD	617503..618372 (-)	870	WP_342821214.1	A24 family peptidase	Machinery gene
QU579_RS03020 (QU579_03020)	pilC	618437..619660 (-)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
QU579_RS03025 (QU579_03025)	pilB	619684..621369 (-)	1686	WP_342821213.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QU579_RS03030 (QU579_03030)	pilA	621381..621818 (-)	438	WP_021453050.1	pilin	Machinery gene
QU579_RS03035 (QU579_03035)	nadC	622081..622968 (-)	888	WP_140260936.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32407.46 Da
• Isoelectric Point: 7.1971

>NTDB_id=849642 QU579_RS03015 WP_342821214.1 617503..618372(-) (pilD) [Vibrio parahaemolyticus strain NJIFDCVp52]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQELLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACSGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWASLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=849642 QU579_RS03015 WP_342821214.1 617503..618372(-) (pilD) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAACTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCTCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCGGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGCAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	52.03	93.772	0.488
pilD	Acinetobacter nosocomialis M2	51.661	93.772	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45