Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SrhCFBP13503_RS16665 Genome accession   NZ_CP128598
Coordinates   3683119..3684378 (+) Length   419 a.a.
NCBI ID   WP_141057503.1    Uniprot ID   -
Organism   Stenotrophomonas rhizophila strain CFBP 13503     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3678119..3689378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SrhCFBP13503_RS16645 (SrhCFBP13503_16640) pilR 3678514..3679899 (+) 1386 WP_141057507.1 sigma-54 dependent transcriptional regulator Regulator
  SrhCFBP13503_RS16650 (SrhCFBP13503_16645) pilB 3680001..3681728 (-) 1728 WP_141057506.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SrhCFBP13503_RS16655 (SrhCFBP13503_16650) - 3681819..3682238 (-) 420 WP_141057505.1 pilin -
  SrhCFBP13503_RS16660 (SrhCFBP13503_16655) - 3682345..3682761 (-) 417 WP_141057504.1 pilin -
  SrhCFBP13503_RS16665 (SrhCFBP13503_16660) pilC 3683119..3684378 (+) 1260 WP_141057503.1 type II secretion system F family protein Machinery gene
  SrhCFBP13503_RS16670 (SrhCFBP13503_16665) pilD 3684386..3685249 (+) 864 WP_038686623.1 A24 family peptidase Machinery gene
  SrhCFBP13503_RS16675 (SrhCFBP13503_16670) coaE 3685260..3685877 (+) 618 WP_141057502.1 dephospho-CoA kinase -
  SrhCFBP13503_RS16680 (SrhCFBP13503_16675) - 3685976..3687343 (-) 1368 WP_137190165.1 HAMP domain-containing sensor histidine kinase -
  SrhCFBP13503_RS16685 (SrhCFBP13503_16680) - 3687306..3687983 (-) 678 WP_017356179.1 response regulator transcription factor -
  SrhCFBP13503_RS16690 (SrhCFBP13503_16685) - 3687992..3688465 (-) 474 WP_141057501.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45777.15 Da        Isoelectric Point: 10.0961

>NTDB_id=849250 SrhCFBP13503_RS16665 WP_141057503.1 3683119..3684378(+) (pilC) [Stenotrophomonas rhizophila strain CFBP 13503]
MSVSRSAVKKEPVVRGTSAMQPFVWEGTDKRGVKMKGEQPAKNANFLRAELRRQGITPNVVKPKPKPMFGAAGSTVTPKD
ISFFSRQMATMMKSGVPIVSSLEIIGSGHKNPRMKNLVGTIRADIEGGSSLYEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPAMVMVVAVMVSAIMLIFVVPQFEDVFKGFGAELPAFTQMIVNMSRFMVSYWWI
MAIVSIASIFGLLFAYKRSPGMQHTMDRFVLKVPVIGLIMNNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQTNLFPHMVIQMTAIGEEAGALDTMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=849250 SrhCFBP13503_RS16665 WP_141057503.1 3683119..3684378(+) (pilC) [Stenotrophomonas rhizophila strain CFBP 13503]
ATGTCCGTAAGCCGTAGCGCAGTAAAAAAAGAGCCCGTCGTGCGTGGCACCTCGGCGATGCAACCGTTTGTCTGGGAGGG
GACCGACAAGCGCGGCGTGAAGATGAAGGGCGAACAGCCCGCCAAGAACGCCAACTTCCTGCGGGCGGAGCTTCGCCGCC
AAGGCATCACGCCTAACGTTGTAAAGCCAAAGCCAAAACCGATGTTTGGCGCAGCAGGCAGTACGGTTACGCCCAAAGAT
ATTTCCTTCTTCAGTCGTCAGATGGCGACGATGATGAAGTCAGGGGTGCCGATCGTCAGCTCTTTAGAGATCATCGGCAG
CGGCCACAAGAACCCTCGGATGAAGAATTTGGTGGGAACGATTCGTGCCGACATCGAGGGCGGCTCTTCTCTTTATGAGG
CGATCAGCAAGCACCCCGTTCAGTTTGACGAGTTGTACCGGAACCTTGTTCGCGCTGGCGAGGGGGCCGGCGTGCTTGAG
ACCGTCTTGGACACCGTTGCCACTTATAAAGAGAACATTGAGGCGCTAAAGGGCAAGATCAAAAAGGCACTGTTCTATCC
TGCGATGGTCATGGTCGTCGCCGTGATGGTCAGTGCAATCATGCTGATCTTTGTAGTTCCTCAGTTCGAAGACGTCTTCA
AGGGCTTCGGAGCCGAGTTACCTGCCTTTACACAGATGATCGTGAACATGTCCAGGTTCATGGTGTCCTACTGGTGGATA
ATGGCGATCGTCTCAATTGCTAGCATTTTTGGACTACTTTTCGCCTACAAGCGCTCCCCTGGCATGCAGCACACGATGGA
TCGGTTCGTGCTGAAGGTTCCTGTCATTGGGTTGATCATGAACAACAGCGCCATCGCGCGTTTCGCGCGCACCACCGCCG
TGACCTTCAAGGCCGGTGTACCGTTGGTGGAAGCGCTGGGTATCGTGGCGGGCGCCACCGGCAACAAGGTATACGAGGAG
GCAGTGCTGCGCATGCGCGACGATGTCTCGGTCGGCTATCCCGTCAACATGGCAATGAAGCAGACCAACCTTTTCCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAAGCCGGCGCCCTGGATACCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATGCCGTTGACGCACTCAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATCGTC
GGTGGCATGGTGATCGGCATGTACCTGCCCATCTTCAAACTCGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.788

94.511

0.508
  pilC Acinetobacter baumannii D1279779

51.478

96.897

0.499
  pilC Acinetobacter baylyi ADP1

51.358

96.659

0.496
  pilC Pseudomonas stutzeri DSM 10701

51.768

94.511

0.489
  pilG Neisseria gonorrhoeae MS11

44.221

94.988

0.42
  pilG Neisseria meningitidis 44/76-A

43.609

95.227

0.415
  pilC Vibrio cholerae strain A1552

41.687

96.181

0.401
  pilC Vibrio campbellii strain DS40M4

39.25

95.465

0.375