Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SrhCFBP13503_RS16645 Genome accession   NZ_CP128598
Coordinates   3678514..3679899 (+) Length   461 a.a.
NCBI ID   WP_141057507.1    Uniprot ID   -
Organism   Stenotrophomonas rhizophila strain CFBP 13503     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3673514..3684899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SrhCFBP13503_RS16630 (SrhCFBP13503_16625) sucD 3674394..3675269 (-) 876 WP_137190155.1 succinate--CoA ligase subunit alpha -
  SrhCFBP13503_RS16635 (SrhCFBP13503_16630) sucC 3675291..3676460 (-) 1170 WP_038686637.1 ADP-forming succinate--CoA ligase subunit beta -
  SrhCFBP13503_RS16640 (SrhCFBP13503_16635) - 3676812..3678425 (+) 1614 WP_141057508.1 PAS domain-containing sensor histidine kinase -
  SrhCFBP13503_RS16645 (SrhCFBP13503_16640) pilR 3678514..3679899 (+) 1386 WP_141057507.1 sigma-54 dependent transcriptional regulator Regulator
  SrhCFBP13503_RS16650 (SrhCFBP13503_16645) pilB 3680001..3681728 (-) 1728 WP_141057506.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SrhCFBP13503_RS16655 (SrhCFBP13503_16650) - 3681819..3682238 (-) 420 WP_141057505.1 pilin -
  SrhCFBP13503_RS16660 (SrhCFBP13503_16655) - 3682345..3682761 (-) 417 WP_141057504.1 pilin -
  SrhCFBP13503_RS16665 (SrhCFBP13503_16660) pilC 3683119..3684378 (+) 1260 WP_141057503.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50230.72 Da        Isoelectric Point: 6.9799

>NTDB_id=849248 SrhCFBP13503_RS16645 WP_141057507.1 3678514..3679899(+) (pilR) [Stenotrophomonas rhizophila strain CFBP 13503]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVTEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNTERAVPAAPPSEQAARLLGDSPAMNVLRTTITKVAR
SQAPVYILGESGVGKELVARTIHAQSARSAGTFVPVNCGAIPSELMESEFFGHKKGSFSGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSIRPVGAATEVPVDVRILSATHKDLGELVEDGRFRHDLYYRINVIELRVPPLRERRSDLP
QLAASILARLARTHERPTPLLAPSAIDALAQYHFPGNVRELENILERALALAESDSIGASDLRLPKHATPRHGAGPAPMH
EEAVVDLPAGNGALPSYIEQMERTAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGMD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=849248 SrhCFBP13503_RS16645 WP_141057507.1 3678514..3679899(+) (pilR) [Stenotrophomonas rhizophila strain CFBP 13503]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGTGACATCCGCGAACTGCTGGTACTGACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAGTTGCTCGCCAGCAACCCGTACGATCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAGGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGGCTGGTCAAGCATGCGCTGGAGCTCAACAACACCGAGCGCGCCGTGCCTGCCGCCCCGC
CCTCGGAACAGGCCGCCCGCCTGCTGGGGGATTCGCCGGCGATGAACGTGCTGCGCACCACCATCACCAAGGTCGCGCGC
AGCCAGGCCCCGGTCTACATCCTGGGCGAATCGGGGGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGCGCAGAGCGC
GCGTTCGGCCGGCACCTTCGTCCCGGTCAACTGCGGCGCGATTCCGTCGGAGCTGATGGAAAGCGAGTTCTTCGGGCACA
AGAAGGGCAGCTTCAGCGGTGCCCACGCCGACAAGCCCGGCCTGTTCCAGGCTGCCCATGGCGGCACCCTGTTCCTGGAC
GAGGTGGCCGAACTGCCACTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGATCCGCCCGGTCGGTGC
CGCCACCGAAGTACCCGTGGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGGTGAACTGGTCGAGGACGGCCGCT
TCCGCCACGACCTGTATTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCGCAGCGACCTGCCG
CAACTGGCCGCCTCGATCCTGGCGCGGCTGGCCCGCACCCACGAGCGCCCCACCCCGCTGCTGGCACCGTCGGCCATCGA
CGCGCTGGCGCAGTACCACTTCCCGGGCAACGTGCGCGAGCTGGAGAACATCCTGGAACGCGCCCTGGCCCTTGCCGAAT
CGGACAGCATCGGCGCCAGTGACCTGCGCCTGCCCAAGCACGCCACGCCGCGCCACGGTGCCGGCCCGGCACCGATGCAC
GAAGAAGCCGTGGTCGACCTGCCCGCCGGCAATGGTGCGCTGCCCTCCTACATCGAACAGATGGAGCGCACCGCCATCCA
GAAGGCGCTGGAAGAGAATCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGTTGCGGTACA
AGCTGAAGAAGCTGGGCATGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.363

99.132

0.618
  pilR Acinetobacter baumannii strain A118

49.247

100

0.497