Detailed information NTG0849251

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SrhCFBP13503_RS16670
• Genome accession: NZ_CP128598
• Coordinates: 3684386..3685249 (+)
• Length: 287 a.a.
• NCBI ID: WP_038686623.1
• Uniprot ID: -
• Organism: Stenotrophomonas rhizophila strain CFBP 13503
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3679386..3690249

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SrhCFBP13503_RS16650 (SrhCFBP13503_16645)	pilB	3680001..3681728 (-)	1728	WP_141057506.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SrhCFBP13503_RS16655 (SrhCFBP13503_16650)	-	3681819..3682238 (-)	420	WP_141057505.1	pilin	-
SrhCFBP13503_RS16660 (SrhCFBP13503_16655)	-	3682345..3682761 (-)	417	WP_141057504.1	pilin	-
SrhCFBP13503_RS16665 (SrhCFBP13503_16660)	pilC	3683119..3684378 (+)	1260	WP_141057503.1	type II secretion system F family protein	Machinery gene
SrhCFBP13503_RS16670 (SrhCFBP13503_16665)	pilD	3684386..3685249 (+)	864	WP_038686623.1	A24 family peptidase	Machinery gene
SrhCFBP13503_RS16675 (SrhCFBP13503_16670)	coaE	3685260..3685877 (+)	618	WP_141057502.1	dephospho-CoA kinase	-
SrhCFBP13503_RS16680 (SrhCFBP13503_16675)	-	3685976..3687343 (-)	1368	WP_137190165.1	HAMP domain-containing sensor histidine kinase	-
SrhCFBP13503_RS16685 (SrhCFBP13503_16680)	-	3687306..3687983 (-)	678	WP_017356179.1	response regulator transcription factor	-
SrhCFBP13503_RS16690 (SrhCFBP13503_16685)	-	3687992..3688465 (-)	474	WP_141057501.1	hypothetical protein	-
SrhCFBP13503_RS16695 (SrhCFBP13503_16690)	rimK	3688709..3689602 (-)	894	WP_141057500.1	30S ribosomal protein S6--L-glutamate ligase	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31786.71 Da
• Isoelectric Point: 8.2370

>NTDB_id=849251 SrhCFBP13503_RS16670 WP_038686623.1 3684386..3685249(+) (pilD) [Stenotrophomonas rhizophila strain CFBP 13503]
MAFLDQHPGLGYPAAAGLGLLIGSFLNVVILRLPKRLEWQWKRDAREVLEEPDIYEPPPPGIVVEPSHCPHCKHKLSWYE
NIPLFSWLALRGKCRHCHAPISIQYPLVELVTALLVLASVWQFGFGWQGFGAIVLSCFLVALSGIDLRTQLLPDQLTLPL
MWLGLIAASDNLYMPAKPALLGALAGYLSLWSVWWLFKQITGKEGMGHGDFKLLAALGAWCGLKGILPIIMLSSIVGAII
GSIWIYSRGRDRATPIPFGPYLAVAGWIVFMWGEQIINAYMGYAGLR

Nucleotide

• Length: 864 bp

>NTDB_id=849251 SrhCFBP13503_RS16670 WP_038686623.1 3684386..3685249(+) (pilD) [Stenotrophomonas rhizophila strain CFBP 13503]
ATGGCATTTCTCGACCAGCATCCCGGCCTCGGCTATCCCGCCGCGGCCGGACTGGGGCTGCTGATCGGCAGCTTCCTCAA
CGTAGTCATCCTGCGCCTGCCCAAGCGGCTGGAGTGGCAGTGGAAGCGCGACGCCCGCGAAGTGCTGGAAGAGCCGGACA
TCTACGAACCGCCGCCGCCGGGGATCGTGGTGGAGCCGTCGCACTGCCCGCACTGCAAGCACAAGCTGTCCTGGTACGAG
AACATCCCGCTGTTCAGCTGGCTGGCGCTGCGTGGCAAGTGCCGCCATTGCCACGCCCCCATCTCGATCCAGTACCCACT
GGTGGAACTGGTGACCGCGCTGCTGGTGCTGGCCAGCGTGTGGCAGTTCGGATTCGGCTGGCAGGGCTTCGGCGCGATCG
TGCTGAGCTGCTTCCTGGTGGCCCTGTCCGGGATCGACCTGCGCACCCAGCTGCTGCCGGACCAGTTGACCCTGCCCCTG
ATGTGGCTGGGCCTGATCGCGGCCAGCGACAATCTCTACATGCCCGCCAAACCTGCCCTGTTGGGCGCCCTGGCCGGCTA
CCTGTCGCTATGGTCGGTGTGGTGGCTGTTCAAGCAGATCACCGGCAAGGAAGGCATGGGCCACGGCGATTTCAAGCTAC
TGGCCGCGCTGGGGGCCTGGTGTGGCCTCAAGGGCATCCTGCCGATCATCATGCTGTCCTCGATTGTGGGCGCGATCATC
GGCTCGATCTGGATCTACTCGCGCGGCCGCGACCGTGCCACGCCCATCCCGTTCGGGCCGTATCTGGCCGTCGCCGGCTG
GATCGTCTTCATGTGGGGCGAGCAGATCATCAACGCCTACATGGGCTACGCCGGCCTGCGCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-123)

• Type IV leader peptidase family (Peptidase_A24) (133-241)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	48.763	98.606	0.481
pilD	Acinetobacter nosocomialis M2	48.763	98.606	0.481
pilD	Vibrio cholerae strain A1552	49.455	95.819	0.474
pilD	Vibrio campbellii strain DS40M4	47.887	98.955	0.474
pilD	Neisseria gonorrhoeae MS11	44.404	96.516	0.429