Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QTN45_RS07320 Genome accession   NZ_CP128500
Coordinates   1409769..1410383 (+) Length   204 a.a.
NCBI ID   WP_289413104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1404769..1415383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS07285 (QTN45_07285) aroE 1405456..1406298 (+) 843 WP_014470708.1 shikimate dehydrogenase -
  QTN45_RS07290 (QTN45_07290) yhbY 1406292..1406582 (+) 291 WP_014470707.1 ribosome assembly RNA-binding protein YhbY -
  QTN45_RS07295 (QTN45_07295) - 1406593..1407162 (+) 570 WP_289413100.1 nicotinate-nucleotide adenylyltransferase -
  QTN45_RS07300 (QTN45_07300) yqeK 1407152..1407712 (+) 561 WP_014470705.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QTN45_RS07305 (QTN45_07305) rsfS 1407729..1408085 (+) 357 WP_014470704.1 ribosome silencing factor -
  QTN45_RS07310 (QTN45_07310) - 1408082..1408819 (+) 738 WP_014470703.1 class I SAM-dependent methyltransferase -
  QTN45_RS07315 (QTN45_07315) comER 1408888..1409709 (-) 822 WP_014470702.1 late competence protein ComER -
  QTN45_RS07320 (QTN45_07320) comEA 1409769..1410383 (+) 615 WP_289413104.1 helix-hairpin-helix domain-containing protein Machinery gene
  QTN45_RS07325 (QTN45_07325) - 1410449..1411018 (+) 570 WP_014470700.1 ComE operon protein 2 -
  QTN45_RS07330 (QTN45_07330) comEC 1411019..1413370 (+) 2352 WP_289413106.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QTN45_RS07335 (QTN45_07335) - 1413389..1413523 (-) 135 WP_003152870.1 YqzM family protein -
  QTN45_RS07340 (QTN45_07340) - 1413564..1413718 (+) 155 Protein_1433 hypothetical protein -
  QTN45_RS07345 (QTN45_07345) holA 1413758..1414793 (+) 1036 Protein_1434 DNA polymerase III subunit delta -
  QTN45_RS07350 (QTN45_07350) rpsT 1414816..1415082 (-) 267 WP_003152876.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22138.32 Da        Isoelectric Point: 5.4688

>NTDB_id=847763 QTN45_RS07320 WP_289413104.1 1409769..1410383(+) (comEA) [Bacillus amyloliquefaciens strain SRCM123364]
MTKVMMTERQRQYLKILGVCLAAGAVLICILLFRSEKEEPVKQQSVLGQTASAPVTDKKDTADDKIMIDIKGAVRHPGVY
EMKAGDRVTQAIKKAGGLKEKADELNVNLAEQLQDGTIVYIPSEGEEANPPKTAAGEKENASGNINTASLDELQAIPGVG
QKKAEAIIAYREENGRFQTAEDLMNVSGFGEKSFERIKTSITVK

Nucleotide


Download         Length: 615 bp        

>NTDB_id=847763 QTN45_RS07320 WP_289413104.1 1409769..1410383(+) (comEA) [Bacillus amyloliquefaciens strain SRCM123364]
ATGACGAAAGTGATGATGACGGAGCGGCAGAGGCAGTACCTGAAAATTCTTGGCGTTTGTCTTGCGGCAGGGGCGGTTTT
GATCTGCATTTTGCTGTTTCGTTCCGAAAAAGAAGAGCCTGTCAAACAGCAGTCCGTGCTCGGCCAAACAGCCTCAGCGC
CCGTCACGGACAAAAAAGACACCGCAGACGATAAGATTATGATTGATATTAAAGGAGCGGTCCGACATCCCGGCGTTTAT
GAAATGAAGGCGGGAGACAGAGTGACGCAAGCCATTAAGAAAGCCGGCGGCCTGAAGGAAAAGGCGGATGAACTGAATGT
TAATTTAGCAGAGCAGCTGCAGGACGGGACGATCGTTTATATCCCGAGTGAAGGCGAAGAGGCGAATCCCCCGAAAACCG
CAGCAGGTGAAAAGGAGAATGCTTCTGGCAATATCAATACGGCATCTCTTGACGAACTTCAGGCGATTCCCGGTGTGGGG
CAGAAAAAAGCGGAAGCGATTATCGCCTACCGAGAAGAAAATGGGCGGTTTCAGACTGCTGAAGATTTGATGAATGTATC
AGGTTTTGGAGAAAAGTCATTTGAGCGGATAAAAACTTCCATTACGGTAAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(68-122)

Helix-hairpin-helix motif (HHH_3)

(144-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

56.923

95.588

0.544
  comEA Latilactobacillus sakei subsp. sakei 23K

33.333

100

0.382
  comEA Staphylococcus aureus MW2

34.842

100

0.377
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

35.484

100

0.377
  comEA/celA/cilE Streptococcus pneumoniae D39

35.484

100

0.377
  comEA/celA/cilE Streptococcus pneumoniae R6

35.484

100

0.377
  comEA/celA/cilE Streptococcus pneumoniae Rx1

35.484

100

0.377
  comEA/celA/cilE Streptococcus mitis NCTC 12261

35.023

100

0.373
  comEA/celA/cilE Streptococcus mitis SK321

35.023

100

0.373
  comEA Staphylococcus aureus N315

34.389

100

0.373