Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   QTN45_RS07330 Genome accession   NZ_CP128500
Coordinates   1411019..1413370 (+) Length   783 a.a.
NCBI ID   WP_289413106.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1406019..1418370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS07290 (QTN45_07290) yhbY 1406292..1406582 (+) 291 WP_014470707.1 ribosome assembly RNA-binding protein YhbY -
  QTN45_RS07295 (QTN45_07295) - 1406593..1407162 (+) 570 WP_289413100.1 nicotinate-nucleotide adenylyltransferase -
  QTN45_RS07300 (QTN45_07300) yqeK 1407152..1407712 (+) 561 WP_014470705.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QTN45_RS07305 (QTN45_07305) rsfS 1407729..1408085 (+) 357 WP_014470704.1 ribosome silencing factor -
  QTN45_RS07310 (QTN45_07310) - 1408082..1408819 (+) 738 WP_014470703.1 class I SAM-dependent methyltransferase -
  QTN45_RS07315 (QTN45_07315) comER 1408888..1409709 (-) 822 WP_014470702.1 late competence protein ComER -
  QTN45_RS07320 (QTN45_07320) comEA 1409769..1410383 (+) 615 WP_289413104.1 helix-hairpin-helix domain-containing protein Machinery gene
  QTN45_RS07325 (QTN45_07325) - 1410449..1411018 (+) 570 WP_014470700.1 ComE operon protein 2 -
  QTN45_RS07330 (QTN45_07330) comEC 1411019..1413370 (+) 2352 WP_289413106.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QTN45_RS07335 (QTN45_07335) - 1413389..1413523 (-) 135 WP_003152870.1 YqzM family protein -
  QTN45_RS07340 (QTN45_07340) - 1413564..1413718 (+) 155 Protein_1433 hypothetical protein -
  QTN45_RS07345 (QTN45_07345) holA 1413758..1414793 (+) 1036 Protein_1434 DNA polymerase III subunit delta -
  QTN45_RS07350 (QTN45_07350) rpsT 1414816..1415082 (-) 267 WP_003152876.1 30S ribosomal protein S20 -
  QTN45_RS07355 (QTN45_07355) gpr 1415285..1416391 (+) 1107 WP_014470697.1 GPR endopeptidase -
  QTN45_RS07360 (QTN45_07360) - 1416459..1417652 (+) 1194 WP_014470696.1 stage II sporulation protein P -
  QTN45_RS07365 (QTN45_07365) - 1417669..1418007 (+) 339 WP_014470695.1 YqxA family protein -

Sequence

Protein


Download         Length: 783 a.a.        Molecular weight: 87136.97 Da        Isoelectric Point: 9.3142

>NTDB_id=847765 QTN45_RS07330 WP_289413106.1 1411019..1413370(+) (comEC) [Bacillus amyloliquefaciens strain SRCM123364]
MKYKYLLLPLAAVSATAGTAAANSFWVLFFFLLYLLFIIVKTKQHTPVIVCLVSFCLYFFLYTVCDAANVSRYQAGSYTE
QALIINIPKVDGAKMSAVIRTHDKEKWASSYKIRSLEEKRLIEQLEPGMRCTFTGSLEQPRHATVPGGFDYKEFLYSQHI
HWIFSVTSIKQCEKSEQPLFKLLNIRKNLISIIRNHVPESSAGIIEALTLGERFSIEDDILSAYQNLGVVHLMAISGMHV
GLITAGLFYALIRIGLTREKAGMLLLLFLPVYTLLSGAAPSVLRASLMLGFYIAGTLLKRSIHSSAALSMSYLLLLLFDP
YLLWQAGFQLSFAVSAALILSSSILKKAGKNRLAGLAMASFIAELSSLPFLLYHFQQISLVSFPMNMVMVPFYTLFVIPF
SVIGFLLLLLSRQAGEFLFYLFDLVMKPVHDFITYAASVDLFTMIASKPDFLSLLMLAVSVFTLFAALEKGGFLKLRKSA
LFFFAVLAYIMFRPYFSPWGEADMLDIGQGDSLFISAPHRKGTVMVDTGGVIAYSEESWKEKHHPYSIGEKVLVPFLNGK
GVKKLDALILTHADQDHIGEAGVLIKKHRVKRLIVPVGFVKEPKDGEILNMAKENNIPVAEAKRGDTITAGDLQFQVLSP
ESPGGRSKNDSSLVLWTVLGRVSWLLTGDLESDGETEVLKTYPNLKADILKAGHHGSKSSTSDAFLKQLQPETALISAGK
DNRYHHPHEEVLDRLKAYSVNVLRTDVSGTIRYRFKKGAGTFSVFPPYDIEETRAQEVKKTAD

Nucleotide


Download         Length: 2352 bp        

>NTDB_id=847765 QTN45_RS07330 WP_289413106.1 1411019..1413370(+) (comEC) [Bacillus amyloliquefaciens strain SRCM123364]
ATGAAATATAAATACCTTCTTCTGCCTCTGGCGGCAGTTTCTGCAACCGCGGGAACTGCCGCCGCTAATTCCTTCTGGGT
CCTATTCTTTTTCCTTCTGTATCTTCTCTTTATTATCGTAAAAACAAAGCAGCACACACCGGTTATCGTCTGCCTCGTTT
CTTTTTGTCTTTATTTCTTTCTGTATACGGTTTGTGACGCTGCGAATGTATCCCGGTATCAGGCCGGCAGCTATACTGAA
CAGGCTCTCATCATAAACATTCCGAAGGTTGACGGAGCGAAAATGTCAGCCGTTATCCGTACCCATGACAAAGAAAAATG
GGCTTCTTCGTACAAAATCCGGTCCCTTGAAGAAAAAAGACTCATTGAACAGCTGGAACCGGGGATGCGCTGTACGTTTA
CAGGCTCACTGGAACAGCCCCGACATGCGACGGTTCCCGGGGGTTTTGATTATAAGGAATTTCTTTATTCCCAGCATATT
CACTGGATATTTTCCGTTACTTCCATTAAGCAGTGCGAAAAATCCGAACAGCCGCTGTTTAAGCTTCTGAACATCAGAAA
GAATTTGATTTCGATCATTCGGAATCATGTACCTGAATCTTCCGCCGGAATTATTGAGGCGCTGACCTTAGGTGAAAGAT
TTTCTATAGAGGACGATATACTGAGCGCTTATCAAAATTTGGGAGTCGTTCATTTAATGGCGATTTCCGGAATGCATGTC
GGTCTTATTACGGCGGGGTTATTTTATGCCCTTATCAGAATTGGACTGACAAGAGAAAAGGCGGGGATGTTGTTGCTGCT
TTTTTTGCCGGTGTATACGTTGTTAAGCGGGGCTGCCCCATCTGTGCTGCGCGCATCCCTCATGCTGGGATTTTATATCG
CCGGAACTCTTTTGAAACGCAGCATTCATTCCTCAGCTGCATTGTCCATGTCTTATCTGCTGCTTCTGCTGTTTGATCCT
TACCTCCTTTGGCAGGCGGGCTTCCAGCTTTCCTTTGCGGTAAGCGCCGCTTTAATTCTGTCATCCTCCATTTTAAAGAA
AGCAGGGAAAAACAGACTCGCCGGGCTTGCGATGGCTTCATTTATTGCGGAGCTCAGTTCGCTGCCGTTTCTTCTCTATC
ATTTTCAGCAGATTTCGCTCGTCAGTTTTCCGATGAATATGGTGATGGTGCCATTTTATACGTTATTTGTCATTCCGTTT
TCTGTCATCGGTTTTCTTCTTCTCTTACTTTCCAGGCAGGCGGGGGAATTTTTGTTTTACCTGTTTGATCTTGTGATGAA
GCCTGTGCATGATTTCATTACATATGCGGCATCCGTTGATTTATTTACAATGATTGCGTCAAAGCCTGACTTTCTGTCGC
TTCTTATGCTTGCGGTTTCCGTTTTTACGCTTTTTGCAGCTTTGGAAAAGGGAGGTTTTTTAAAGCTCAGGAAATCGGCT
CTTTTTTTCTTTGCGGTTTTGGCATATATAATGTTCCGTCCTTATTTCAGTCCTTGGGGAGAAGCGGATATGCTTGATAT
CGGGCAGGGAGACTCACTGTTTATAAGTGCCCCGCACCGTAAAGGTACCGTAATGGTTGATACAGGAGGAGTGATTGCTT
ATTCCGAAGAATCGTGGAAAGAAAAACACCACCCGTATTCTATCGGTGAGAAAGTTTTAGTTCCGTTTTTGAACGGAAAA
GGGGTGAAAAAGCTGGATGCGCTGATTTTAACCCATGCGGATCAGGATCATATCGGGGAAGCCGGAGTATTAATCAAAAA
ACATAGAGTGAAGCGGTTAATTGTCCCCGTGGGATTCGTGAAGGAACCGAAGGATGGGGAAATATTGAATATGGCGAAAG
AAAACAACATTCCCGTTGCTGAAGCAAAACGGGGCGATACCATAACAGCCGGTGATCTTCAGTTTCAGGTGCTGTCTCCG
GAGTCGCCTGGCGGAAGGAGTAAAAATGATTCGTCACTGGTGCTTTGGACGGTTTTAGGCAGAGTGAGCTGGCTTTTGAC
GGGAGATTTAGAATCGGACGGCGAAACAGAGGTGCTGAAAACGTATCCGAATCTGAAGGCTGATATATTGAAGGCCGGTC
ATCACGGCAGCAAAAGCTCTACGAGTGACGCCTTTTTGAAACAGCTTCAGCCGGAGACAGCACTGATTTCAGCAGGAAAA
GATAATCGTTATCATCATCCGCATGAAGAAGTGCTGGATCGTTTGAAAGCTTACTCTGTCAATGTGCTTCGCACCGATGT
CAGCGGAACTATTCGATACAGATTTAAAAAAGGCGCCGGAACGTTTTCTGTCTTCCCTCCATATGATATAGAAGAAACCA
GGGCGCAGGAAGTAAAAAAGACTGCCGATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(27-171)

Competence protein (Competence)

(208-469)

Metallo-beta-lactamase superfamily (Lactamase_B)

(508-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Bacillus subtilis subsp. subtilis str. 168

55.44

98.595

0.547