Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   V4U93_RS08050 Genome accession   NZ_CP144755
Coordinates   1585656..1586462 (-) Length   268 a.a.
NCBI ID   WP_016265510.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain DCF0720     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1580656..1591462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4U93_RS08025 (V4U93_08025) - 1581052..1581483 (+) 432 WP_016265507.1 GNAT family N-acetyltransferase -
  V4U93_RS08030 (V4U93_08030) - 1581559..1582032 (+) 474 WP_011375164.1 hypothetical protein -
  V4U93_RS08035 (V4U93_08035) - 1582174..1583874 (+) 1701 WP_338453604.1 glycosyltransferase family 8 protein -
  V4U93_RS08040 (V4U93_08040) - 1583943..1584479 (-) 537 WP_011375166.1 DUF402 domain-containing protein -
  V4U93_RS08045 (V4U93_08045) mutY 1584566..1585669 (-) 1104 WP_112234085.1 A/G-specific adenine glycosylase -
  V4U93_RS08050 (V4U93_08050) recX 1585656..1586462 (-) 807 WP_016265510.1 recombination regulator RecX Regulator
  V4U93_RS08055 (V4U93_08055) - 1586464..1586643 (-) 180 WP_011375169.1 hypothetical protein -
  V4U93_RS08060 (V4U93_08060) rlmD 1586971..1588362 (+) 1392 WP_011375170.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  V4U93_RS08065 (V4U93_08065) - 1588578..1589084 (-) 507 WP_076639014.1 DUF805 domain-containing protein -
  V4U93_RS08070 (V4U93_08070) - 1589175..1589645 (+) 471 WP_338453607.1 nucleoside 2-deoxyribosyltransferase -
  V4U93_RS08075 (V4U93_08075) - 1589731..1589973 (+) 243 WP_278319760.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31069.99 Da        Isoelectric Point: 6.0698

>NTDB_id=847749 V4U93_RS08050 WP_016265510.1 1585656..1586462(-) (recX) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MPQITKITSQKQKGRYNIFIDEQFAFGVTESVLIKFRLAKGLEIDSSLQRDIQKEDDNAKAYQLALNYLSHQLRTEKELT
QYLRDHEITPEGIETSLTKLRELHYLDDQDYADSYVRTVINTSDKGPKVVRQKLIQKGVSANHIDQALTLYTDEEQVTVG
LATAQKLAKKYRHSSFFEQQQKIKQGLMQKGFGGDNLSRIIDELALEEDSDSEADALAALGEKKWRRYRLLEPRERRMKM
QQALYRKGFNIDAINRFIDDQEVSDDTE

Nucleotide


Download         Length: 807 bp        

>NTDB_id=847749 V4U93_RS08050 WP_016265510.1 1585656..1586462(-) (recX) [Latilactobacillus sakei subsp. sakei strain DCF0720]
ATGCCACAGATTACTAAAATTACCTCACAAAAACAAAAAGGGCGCTATAACATTTTTATCGACGAGCAGTTTGCCTTTGG
GGTGACTGAAAGTGTCTTAATCAAGTTTCGGCTTGCAAAAGGGCTCGAAATCGATAGTAGCTTACAACGTGACATTCAAA
AAGAAGATGACAATGCCAAGGCCTATCAACTGGCCTTGAATTATTTAAGTCACCAATTACGAACGGAAAAAGAATTAACA
CAATACTTGCGTGATCATGAAATTACGCCAGAAGGCATTGAAACCAGTTTGACAAAATTACGCGAACTACATTATTTGGA
TGATCAGGATTACGCGGACAGTTATGTTAGAACGGTGATTAATACTTCGGATAAGGGGCCTAAAGTGGTTCGACAAAAAT
TGATTCAAAAAGGGGTTAGTGCTAATCATATCGATCAAGCGTTGACGCTATATACAGACGAAGAACAAGTGACAGTCGGC
TTAGCAACTGCCCAAAAGCTAGCGAAGAAGTACCGCCACAGTTCGTTCTTCGAACAACAACAAAAGATTAAACAAGGCTT
GATGCAAAAGGGCTTTGGTGGTGATAATTTAAGTCGGATTATTGACGAATTAGCGCTTGAAGAAGACAGTGATAGTGAAG
CAGATGCATTGGCAGCCCTTGGCGAGAAAAAATGGCGCCGTTATCGCCTATTAGAACCGCGCGAGCGGCGGATGAAGATG
CAACAAGCACTTTACCGGAAAGGATTTAATATTGATGCAATCAACCGTTTCATCGACGACCAAGAAGTATCAGATGACAC
CGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(83-203)

RecX family (RecX_HTH2)

(204-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

37.643

98.134

0.369