NTDB

Overview

Name	comFC	Type	Machinery gene
Locus tag	QTN45_RS02770	Genome accession	NZ_CP128500
Coordinates	541348..541782 (+)	Length	144 a.a.
NCBI ID	WP_289394470.1	Uniprot ID	-
Organism	Bacillus amyloliquefaciens strain SRCM123364
Function	ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 536348..546782

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QTN45_RS02740 (QTN45_02740)	degS	536378..537541 (+)	1164	WP_013353787.1	two-component sensor histidine kinase DegS	Regulator
QTN45_RS02745 (QTN45_02745)	degU	537618..538307 (+)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
QTN45_RS02750 (QTN45_02750)	-	538404..539252 (+)	849	WP_013353786.1	DegV family protein	-
QTN45_RS02755 (QTN45_02755)	comFA	539359..540744 (+)	1386	WP_013353785.1	DEAD/DEAH box helicase	Machinery gene
QTN45_RS02760 (QTN45_02760)	-	540803..541087 (+)	285	WP_013353784.1	competence protein ComFB	-
QTN45_RS02765 (QTN45_02765)	-	541105..541215 (+)	111	Protein_548	amidophosphoribosyltransferase	-
QTN45_RS02770 (QTN45_02770)	comFC	541348..541782 (+)	435	WP_289394470.1	phosphoribosyltransferase family protein	Machinery gene
QTN45_RS02775 (QTN45_02775)	-	541856..542275 (+)	420	WP_013353782.1	TIGR03826 family flagellar region protein	-
QTN45_RS02780 (QTN45_02780)	flgM	542345..542611 (+)	267	WP_013353781.1	flagellar biosynthesis anti-sigma factor FlgM	-
QTN45_RS02785 (QTN45_02785)	-	542626..543108 (+)	483	WP_013353780.1	flagellar protein FlgN	-
QTN45_RS02790 (QTN45_02790)	flgK	543124..544641 (+)	1518	WP_013353779.1	flagellar hook-associated protein FlgK	-
QTN45_RS02795 (QTN45_02795)	flgL	544653..545570 (+)	918	WP_013353778.1	flagellar hook-associated protein FlgL	-
QTN45_RS02800 (QTN45_02800)	-	545662..546231 (+)	570	WP_014471091.1	DUF6470 family protein	-
QTN45_RS02805 (QTN45_02805)	fliW	546261..546692 (+)	432	WP_007407475.1	flagellar assembly protein FliW	-

Sequence

Protein

Download Length: 144 a.a. Molecular weight: 15713.12 Da Isoelectric Point: 10.3140

                                >NTDB_id=847749 QTN45_RS02770 WP_289394470.1 541348..541782(+) (comFC) [Bacillus amyloliquefaciens strain SRCM123364]

MKDSLARFKFRGDTKIIQTFERDFTAGFKAAYPANTHILVPIPLSPERLAERGFNQSELLASLLGMPVISPLIRLNNEKQ

SKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAGALLTAGKALSVSSFTLIRS

Nucleotide

Download Length: 435 bp

                                >NTDB_id=847749 QTN45_RS02770 WP_289394470.1 541348..541782(+) (comFC) [Bacillus amyloliquefaciens strain SRCM123364]

ATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATACGAAAATCATTCAAACATTTGAACGTGATTTTACTGCCGG

CTTTAAAGCGGCATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGCCCCGAACGGCTGGCGGAGCGCGGAT

TTAATCAATCCGAGCTGCTGGCCTCGCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTGAACAATGAAAAACAA

TCCAAAAAGAGCAAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCAGCTGCCGAAAACTCCGCCGAAGGTATGAACGT

CATTTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGGAGCTCTGCTGACAGCAGGCAAAGCGT

TATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(81-142)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comFC	Bacillus subtilis subsp. subtilis str. 168	65.972	100	0.66
comFC/cflB	Streptococcus mitis NCTC 12261	38.462	99.306	0.382
comFC/cflB	Streptococcus mitis SK321	37.762	99.306	0.375
comFC/cflB	Streptococcus pneumoniae TIGR4	37.063	99.306	0.368
comFC/cflB	Streptococcus pneumoniae Rx1	37.063	99.306	0.368
comFC/cflB	Streptococcus pneumoniae D39	37.063	99.306	0.368
comFC/cflB	Streptococcus pneumoniae R6	37.063	99.306	0.368
comFC	Lactococcus lactis subsp. cremoris KW2	36.364	99.306	0.361

Detailed information NTG0847749