Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   QTN45_RS02740 Genome accession   NZ_CP128500
Coordinates   536378..537541 (+) Length   387 a.a.
NCBI ID   WP_013353787.1    Uniprot ID   A0A9P1JKJ4
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 531378..542541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS02720 (QTN45_02720) - 531724..532920 (+) 1197 WP_013353791.1 glycosyltransferase -
  QTN45_RS02725 (QTN45_02725) - 533053..534129 (+) 1077 WP_013353790.1 MraY family glycosyltransferase -
  QTN45_RS02730 (QTN45_02730) - 534229..535503 (-) 1275 WP_013353789.1 LCP family protein -
  QTN45_RS02735 (QTN45_02735) - 535508..536155 (-) 648 WP_013353788.1 YigZ family protein -
  QTN45_RS02740 (QTN45_02740) degS 536378..537541 (+) 1164 WP_013353787.1 two-component sensor histidine kinase DegS Regulator
  QTN45_RS02745 (QTN45_02745) degU 537618..538307 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QTN45_RS02750 (QTN45_02750) - 538404..539252 (+) 849 WP_013353786.1 DegV family protein -
  QTN45_RS02755 (QTN45_02755) comFA 539359..540744 (+) 1386 WP_013353785.1 DEAD/DEAH box helicase Machinery gene
  QTN45_RS02760 (QTN45_02760) - 540803..541087 (+) 285 WP_013353784.1 competence protein ComFB -
  QTN45_RS02765 (QTN45_02765) - 541105..541215 (+) 111 Protein_548 amidophosphoribosyltransferase -
  QTN45_RS02770 (QTN45_02770) comFC 541348..541782 (+) 435 WP_289394470.1 phosphoribosyltransferase family protein Machinery gene
  QTN45_RS02775 (QTN45_02775) - 541856..542275 (+) 420 WP_013353782.1 TIGR03826 family flagellar region protein -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45028.85 Da        Isoelectric Point: 7.1379

>NTDB_id=847746 QTN45_RS02740 WP_013353787.1 536378..537541(+) (degS) [Bacillus amyloliquefaciens strain SRCM123364]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKEAKQKKNKSFGLLGMKERVDLLEGTITIDSKLGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=847746 QTN45_RS02740 WP_013353787.1 536378..537541(+) (degS) [Bacillus amyloliquefaciens strain SRCM123364]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTCGAAGTACATACCCGGCATGCAAGAAACCGCTTGTCGGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTTTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTGCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATTATCGAAGCCCAGGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCGGCTCAAATGCTGGCAAATGTTATGATGAGATCGGAATTGATAGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGCTTTCAGGAAATCAGAAATCTTCGCCAGAATGTGCGGAATGCTCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCGCTGAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACTGCTGATTTTGTGGTTCTTATTATTAAGGACAACGGAAAAGGCTTTGATATCAAGGAAGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTCGAAGGAACGATAACGATAGACTCTAAACTAGGTCTTG
GGACATTTATCATGATTAAGGTTCCTTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.325

99.483

0.948