Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   V4U93_RS07750 Genome accession   NZ_CP144755
Coordinates   1519558..1519791 (-) Length   77 a.a.
NCBI ID   WP_327063564.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain DCF0720     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1514558..1524791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4U93_RS07735 (V4U93_07735) - 1516142..1517575 (+) 1434 WP_016265464.1 amino acid permease -
  V4U93_RS07740 (V4U93_07740) - 1517751..1518884 (-) 1134 WP_016265465.1 ABC transporter membrane-spanning/permease subunit -
  V4U93_RS07745 (V4U93_07745) - 1518902..1519468 (-) 567 WP_338034813.1 AAA family ATPase -
  V4U93_RS07750 (V4U93_07750) pptA 1519558..1519791 (-) 234 WP_327063564.1 ATP-binding cassette domain-containing protein Regulator
  V4U93_RS07755 (V4U93_07755) - 1519778..1520167 (-) 390 WP_035145076.1 GntR family transcriptional regulator -
  V4U93_RS07760 (V4U93_07760) - 1520289..1521053 (-) 765 WP_016265468.1 alpha/beta fold hydrolase -
  V4U93_RS07765 (V4U93_07765) argS 1521315..1523006 (-) 1692 WP_016265470.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 77 a.a.        Molecular weight: 8659.99 Da        Isoelectric Point: 6.4611

>NTDB_id=847746 V4U93_RS07750 WP_327063564.1 1519558..1519791(-) (pptA) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MLTINKLHKRIDQKSILEDISFEQEPGEILGLVGRNGAGKSTLLKSIASHYLLDGGQILIDQVSIDEDRRLRTQIFI

Nucleotide


Download         Length: 234 bp        

>NTDB_id=847746 V4U93_RS07750 WP_327063564.1 1519558..1519791(-) (pptA) [Latilactobacillus sakei subsp. sakei strain DCF0720]
ATGCTGACAATTAACAAGTTACATAAACGAATTGATCAAAAATCAATTCTAGAAGATATTAGTTTTGAACAAGAACCGGG
GGAAATCTTGGGATTGGTCGGCCGCAATGGTGCTGGTAAGTCGACATTGCTAAAAAGTATAGCTAGTCATTATTTATTGG
ATGGTGGTCAGATTTTGATTGATCAAGTTTCAATCGATGAAGATCGTCGCTTGCGGACACAAATTTTTATTTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

41.176

88.312

0.364
  pptA Streptococcus salivarius strain HSISS4

41.176

88.312

0.364