Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QTN45_RS02755 Genome accession   NZ_CP128500
Coordinates   539359..540744 (+) Length   461 a.a.
NCBI ID   WP_013353785.1    Uniprot ID   A0A9P1NJB2
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 534359..545744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS02735 (QTN45_02735) - 535508..536155 (-) 648 WP_013353788.1 YigZ family protein -
  QTN45_RS02740 (QTN45_02740) degS 536378..537541 (+) 1164 WP_013353787.1 two-component sensor histidine kinase DegS Regulator
  QTN45_RS02745 (QTN45_02745) degU 537618..538307 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QTN45_RS02750 (QTN45_02750) - 538404..539252 (+) 849 WP_013353786.1 DegV family protein -
  QTN45_RS02755 (QTN45_02755) comFA 539359..540744 (+) 1386 WP_013353785.1 DEAD/DEAH box helicase Machinery gene
  QTN45_RS02760 (QTN45_02760) - 540803..541087 (+) 285 WP_013353784.1 competence protein ComFB -
  QTN45_RS02765 (QTN45_02765) - 541105..541215 (+) 111 Protein_548 amidophosphoribosyltransferase -
  QTN45_RS02770 (QTN45_02770) comFC 541348..541782 (+) 435 WP_289394470.1 phosphoribosyltransferase family protein Machinery gene
  QTN45_RS02775 (QTN45_02775) - 541856..542275 (+) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  QTN45_RS02780 (QTN45_02780) flgM 542345..542611 (+) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  QTN45_RS02785 (QTN45_02785) - 542626..543108 (+) 483 WP_013353780.1 flagellar protein FlgN -
  QTN45_RS02790 (QTN45_02790) flgK 543124..544641 (+) 1518 WP_013353779.1 flagellar hook-associated protein FlgK -
  QTN45_RS02795 (QTN45_02795) flgL 544653..545570 (+) 918 WP_013353778.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52689.28 Da        Isoelectric Point: 10.2042

>NTDB_id=847748 QTN45_RS02755 WP_013353785.1 539359..540744(+) (comFA) [Bacillus amyloliquefaciens strain SRCM123364]
MSGGASEFSKVRDFFYGRHLLRSEIPFSDQCIKRFIEKEYITAEPSVIRRKNRYVCRRCGQSDQARFAVFWAPSAKRHIT
YCRSCVVMGRADELTSLYSWNLAAENSWEPIKLSWEGTLTDGQKQAAEALIEAIKEKQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGSLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKRAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLEKGKLPRSVTDWV
RQKLQSRLPVFLFVPSVHILRKTTDYFQKLNIRAEGVHAEDTCRKDKVKRFREGRFDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEYMNKLAQKNKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=847748 QTN45_RS02755 WP_013353785.1 539359..540744(+) (comFA) [Bacillus amyloliquefaciens strain SRCM123364]
ATGTCCGGAGGTGCTTCAGAATTTTCGAAGGTGCGGGATTTCTTTTACGGCAGGCATTTATTGAGATCTGAGATTCCGTT
TTCTGATCAGTGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAGTCATCCGCCGGAAAAACCGTT
ATGTCTGCCGCCGATGCGGCCAGTCTGACCAAGCCCGCTTTGCGGTATTTTGGGCGCCCTCTGCCAAAAGACATATTACC
TATTGCCGTTCCTGTGTCGTAATGGGAAGGGCTGATGAACTGACGTCATTATACTCTTGGAATCTAGCGGCTGAAAACAG
CTGGGAGCCTATCAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCGGAAGCGCTTATAGAAGCGA
TAAAAGAGAAACAAGAGCTGCTGGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATAGAGTTT
GCGCTGAATCACGGCTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGTGAGGACAAAGGCAGCTTGACTCCGCTAATGATCTCAA
CCGCTCACCAGCTGATGCGCTATCGAGATATTTTTGATGTAATGATAATAGATGAAGTAGATGCTTTTCCTTTTTCAGCT
GATGAGACATTAAGATTTGCGGTTGATAAAGCCAGAAAGAAAAACAGCGCCCTAGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAGGGCTGAGGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCGCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTGAGAAAGGAAAACTGCCGCGTTCTGTAACGGATTGGGTC
CGGCAAAAACTTCAATCACGACTGCCGGTTTTCTTATTCGTTCCGTCTGTACATATATTAAGAAAGACAACGGATTATTT
TCAGAAATTAAACATCCGTGCAGAAGGCGTGCATGCGGAAGACACATGCAGAAAGGATAAAGTGAAACGGTTCAGAGAGG
GACGGTTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTACCTAAAGTCCAGACTTGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCACTCGTACAGATTGCAGGCAGAACGGGCAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGTATGAAGAAAGCAAAAAAACATATAGAATATATGAACAAATTGG
CACAAAAAAATAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(329-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.02

99.132

0.625