Detailed information NTG0847748

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: V4U93_RS07990
• Genome accession: NZ_CP144755
• Coordinates: 1572210..1574375 (+)
• Length: 721 a.a.
• NCBI ID: WP_099960334.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei subsp. sakei strain DCF0720
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1567210..1579375

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V4U93_RS07970 (V4U93_07970)	-	1569062..1569502 (-)	441	WP_016265501.1	CopY/TcrY family copper transport repressor	-
V4U93_RS07975 (V4U93_07975)	ptsP	1569652..1571379 (-)	1728	WP_338453856.1	phosphoenolpyruvate--protein phosphotransferase	-
V4U93_RS07980 (V4U93_07980)	-	1571376..1571642 (-)	267	WP_004265632.1	phosphocarrier protein HPr	-
V4U93_RS07985 (V4U93_07985)	-	1571785..1571976 (-)	192	WP_011375155.1	hypothetical protein	-
V4U93_RS07990 (V4U93_07990)	clpC	1572210..1574375 (+)	2166	WP_099960334.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
V4U93_RS07995 (V4U93_07995)	-	1574483..1574779 (+)	297	WP_011375157.1	DUF1827 family protein	-
V4U93_RS08000 (V4U93_08000)	-	1574904..1575326 (+)	423	WP_076645404.1	PPC domain-containing DNA-binding protein	-
V4U93_RS08005 (V4U93_08005)	-	1575533..1576618 (+)	1086	WP_271894594.1	MucBP domain-containing protein	-
V4U93_RS08010 (V4U93_08010)	-	1576731..1578308 (-)	1578	WP_011375160.1	peptide chain release factor 3	-

Sequence

Protein

• Length: 721 a.a.
• Molecular weight: 79692.07 Da
• Isoelectric Point: 5.0573

>NTDB_id=847748 V4U93_RS07990 WP_099960334.1 1572210..1574375(+) (clpC) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MLCQNCQKNPATIHLYTSVNGQNQAINLCQNCYQALKQQGMSGQYNDPFGFSNLDELFNAINNPNAERNAANQGPQTQGG
RNGGGNNGQNGESLLSQFGVNLTNLAKGGQIDPVIGRDKEIARVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQKIADG
DVPAKLKDRQVIRLDVVSLVQGTGIRGQFEERMQQLITELKQNKQIILFIDEIHEIVGAGNAEGGMDAGNVLKPALARGE
LQLVGATTNNEFRQIEKDAALARRLQPVAVNEPSVDETVLILKGLQDKYESYHHVHYTDEALKAAAALSSRYIQDRYLPD
KAIDLLDEAGSKKNLTITLMDPKELEAKIKSAEAQKQEALKQEDYEKAATYRDQVTQLSEMKANNSVEKAQEPTITEKDM
EKIVEEKTHIPVGELKAQEQAQLKNLAQDLEARVIGQDTAVDKVARSIRRSRIGFNKSGRPIGSFLFVGPTGVGKTELAK
QIAKELFGSTDAMIRFDMSEYMEKFSVSKLIGSPPGYVGYEEAGQLTEQVRRNPYSLILLDEIEKAHPDVMHMFLQILDD
GRLTDSQGRTVSFKDTIIIMTSNAGQTDAEANVGFGAAVAGQTHSILDQLTNYFKPEFLNRFDDIIEFQPLSKDNLLKIV
SLMLDQTNAMIADQGLHIAVTDDAKSKLVDLGYNPEMGARPLRRVIQEQIEDRVADYYLDHPEHKQLKAQLNDDQIQIVQ
G

Nucleotide

• Length: 2166 bp

>NTDB_id=847748 V4U93_RS07990 WP_099960334.1 1572210..1574375(+) (clpC) [Latilactobacillus sakei subsp. sakei strain DCF0720]
ATGCTTTGTCAAAATTGTCAAAAAAATCCAGCAACAATCCATCTCTACACTAGCGTCAATGGTCAAAACCAAGCCATTAA
CCTTTGTCAAAACTGTTATCAAGCACTAAAGCAACAAGGAATGAGTGGTCAATATAATGATCCCTTTGGTTTTAGTAATC
TTGATGAACTCTTCAATGCAATCAACAATCCAAACGCTGAACGCAATGCTGCTAACCAAGGCCCCCAAACACAAGGTGGC
CGTAATGGCGGCGGTAACAACGGTCAAAATGGTGAAAGTCTACTCAGCCAATTTGGTGTGAACCTCACCAACCTTGCTAA
GGGCGGTCAAATTGATCCGGTGATTGGTCGCGATAAGGAAATCGCGCGCGTCATCGAAATTCTCAATCGGCGTACCAAGA
ATAATCCAGTCTTAATTGGTGAAGCCGGCGTTGGTAAAACAGCCGTTGTCGAAGGTTTAGCGCAAAAAATTGCCGATGGC
GACGTTCCTGCTAAATTAAAGGATCGCCAAGTGATTCGCTTGGATGTCGTTTCATTAGTACAAGGGACTGGTATTCGCGG
TCAATTTGAAGAACGGATGCAACAGTTGATCACTGAGCTCAAACAAAATAAGCAGATTATCCTCTTTATTGATGAAATTC
ACGAAATCGTTGGCGCCGGCAATGCTGAAGGCGGCATGGATGCTGGTAACGTGTTGAAGCCAGCTCTTGCGCGTGGCGAA
TTACAACTCGTTGGCGCCACAACTAATAATGAATTCCGTCAGATTGAAAAAGACGCAGCCCTTGCACGTCGTCTTCAACC
GGTCGCGGTCAACGAACCATCTGTTGACGAAACCGTTCTAATTCTCAAAGGGCTTCAAGATAAATACGAAAGTTATCACC
ACGTTCACTATACGGACGAGGCGCTTAAAGCAGCAGCGGCCCTTTCTAGTCGTTATATCCAAGATCGTTATTTGCCTGAT
AAGGCTATCGACCTTTTGGATGAAGCAGGTTCTAAGAAAAACTTGACGATTACCTTAATGGATCCTAAGGAATTAGAAGC
CAAGATTAAATCTGCAGAAGCACAAAAACAAGAAGCCCTCAAACAAGAAGATTACGAAAAAGCAGCTACCTATCGTGATC
AAGTCACACAGCTCTCTGAAATGAAAGCTAATAATTCAGTTGAAAAAGCCCAAGAACCAACAATCACCGAAAAGGATATG
GAAAAAATTGTCGAAGAAAAAACCCATATTCCAGTTGGCGAATTAAAGGCGCAAGAACAAGCTCAACTTAAAAACTTAGC
GCAAGATCTTGAAGCACGTGTCATTGGTCAAGATACCGCAGTTGATAAAGTCGCTCGTTCAATTCGTCGTAGTCGAATTG
GCTTTAATAAATCCGGCCGACCAATTGGCTCCTTCCTCTTTGTTGGCCCAACCGGGGTTGGTAAAACGGAATTAGCCAAA
CAAATTGCCAAAGAACTCTTTGGCAGTACCGATGCGATGATTCGCTTTGATATGAGTGAATACATGGAGAAATTCAGTGT
GTCAAAATTGATTGGTTCACCTCCTGGCTACGTTGGTTATGAAGAAGCCGGGCAATTAACGGAACAAGTTCGTCGGAACC
CTTATAGTTTGATTCTTTTGGATGAAATCGAAAAGGCTCACCCTGACGTTATGCACATGTTCTTACAAATTCTAGATGAC
GGTCGTCTAACCGATTCACAAGGTCGGACTGTCAGCTTCAAAGACACAATCATTATCATGACGTCTAACGCTGGACAAAC
TGATGCTGAGGCTAACGTTGGTTTCGGTGCAGCTGTCGCTGGCCAAACCCATTCAATTCTCGATCAGTTAACGAACTACT
TTAAACCAGAATTCTTAAATCGTTTCGACGATATTATTGAATTCCAACCATTAAGTAAAGATAATCTATTAAAGATTGTC
AGCTTAATGCTTGATCAAACTAACGCGATGATTGCCGATCAAGGCCTCCACATTGCTGTGACGGATGACGCTAAATCTAA
ATTAGTCGATTTGGGCTACAACCCTGAAATGGGCGCTCGGCCACTACGTCGTGTCATTCAAGAACAAATTGAAGACCGCG
TTGCTGATTATTATTTAGATCATCCAGAACATAAGCAATTAAAAGCGCAGTTAAATGATGATCAGATTCAAATTGTGCAA
GGATAA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (137-265)

• AAA domain (Cdc48 subfamily) (AAA_2) (460-625)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (631-702)

• AAA lid domain (AAA_lid_9) (274-372)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	67.852	100	0.688
clpE	Streptococcus mutans UA159	66.849	100	0.68
clpE	Streptococcus pneumoniae TIGR4	63.946	100	0.652
clpE	Streptococcus pneumoniae Rx1	63.946	100	0.652
clpE	Streptococcus pneumoniae D39	63.946	100	0.652
clpE	Streptococcus pneumoniae R6	63.946	100	0.652
clpC	Bacillus subtilis subsp. subtilis str. 168	51.502	92.372	0.476
clpC	Streptococcus thermophilus LMG 18311	46.189	90.985	0.42
clpC	Streptococcus thermophilus LMD-9	46.237	90.291	0.417
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.334	85.853	0.406
clpC	Streptococcus mutans UA159	47.231	85.16	0.402
clpC	Streptococcus pneumoniae Rx1	47.068	85.16	0.401
clpC	Streptococcus pneumoniae D39	47.068	85.16	0.401
clpC	Streptococcus pneumoniae TIGR4	46.906	85.16	0.399