Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   V4U93_RS07935 Genome accession   NZ_CP144755
Coordinates   1559362..1560036 (+) Length   224 a.a.
NCBI ID   WP_011375146.1    Uniprot ID   Q38VM7
Organism   Latilactobacillus sakei subsp. sakei strain DCF0720     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1554362..1565036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4U93_RS07915 (V4U93_07915) - 1554696..1555436 (-) 741 WP_025016058.1 MBL fold metallo-hydrolase -
  V4U93_RS07920 (V4U93_07920) - 1555566..1556351 (-) 786 WP_016265492.1 DUF975 family protein -
  V4U93_RS07925 (V4U93_07925) - 1556369..1558468 (-) 2100 WP_101378004.1 ABC transporter permease -
  V4U93_RS07930 (V4U93_07930) - 1558446..1559222 (-) 777 WP_011375145.1 ABC transporter ATP-binding protein -
  V4U93_RS07935 (V4U93_07935) braR 1559362..1560036 (+) 675 WP_011375146.1 response regulator transcription factor Regulator
  V4U93_RS07940 (V4U93_07940) - 1560046..1561113 (+) 1068 WP_016265495.1 HAMP domain-containing histidine kinase -
  V4U93_RS07945 (V4U93_07945) - 1561223..1562389 (+) 1167 WP_016265496.1 hypothetical protein -
  V4U93_RS07950 (V4U93_07950) - 1562423..1563718 (-) 1296 WP_112260863.1 PTS sugar transporter subunit IIC -
  V4U93_RS07955 (V4U93_07955) nrdG 1563964..1564545 (-) 582 WP_016265498.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25960.96 Da        Isoelectric Point: 4.7301

>NTDB_id=847747 V4U93_RS07935 WP_011375146.1 1559362..1560036(+) (braR) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MFEIMIVEDDPTIANLIAENLEKWQLKAIIPDDFDTIFDRFLTDKPHLVLLDINLPVYDGFYWCRKIREVSKVPIIFISS
RSTNMDMVMSMNMGGDDFVNKPFSMEVLIAKINALLRRTYNYVDQNTDVIEHNGLLINLQSGGAQVGDTVVDLSKNEYKL
LQFLMRQHGQIVSREKLLRALWDDERFVDDNTLTVNINRLRKKIEQAGLEDYIQTKIGQGYIIP

Nucleotide


Download         Length: 675 bp        

>NTDB_id=847747 V4U93_RS07935 WP_011375146.1 1559362..1560036(+) (braR) [Latilactobacillus sakei subsp. sakei strain DCF0720]
ATGTTTGAAATTATGATTGTTGAAGATGATCCTACAATTGCTAACTTGATTGCTGAAAACTTAGAGAAATGGCAGTTAAA
AGCCATTATCCCCGATGATTTCGATACCATTTTTGACCGTTTTTTAACGGATAAACCCCACTTAGTCCTACTAGATATCA
ATTTACCCGTCTATGACGGTTTCTATTGGTGTCGTAAAATTCGTGAAGTTTCTAAAGTGCCGATTATCTTCATCTCTAGC
CGCAGTACTAATATGGATATGGTGATGTCAATGAACATGGGTGGCGATGATTTTGTTAACAAGCCCTTTTCAATGGAAGT
CTTAATCGCTAAAATCAATGCGCTTTTACGCCGGACCTATAACTATGTCGATCAAAATACAGACGTCATCGAACATAACG
GCCTTCTAATTAACTTACAAAGTGGTGGGGCTCAAGTTGGTGATACTGTCGTTGACCTCTCTAAAAATGAATATAAGTTA
CTCCAATTTTTGATGCGCCAACACGGTCAAATTGTCAGTCGTGAAAAACTCCTACGGGCGTTATGGGACGACGAACGTTT
TGTCGATGACAATACATTAACCGTCAATATCAATCGGCTGCGTAAAAAAATCGAACAAGCCGGTCTGGAAGACTATATTC
AAACTAAAATCGGCCAAGGCTACATCATCCCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38VM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.575

97.768

0.455
  vicR Streptococcus mutans UA159

34.914

100

0.362