Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QTN45_RS02745 Genome accession   NZ_CP128500
Coordinates   537618..538307 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 532618..543307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS02725 (QTN45_02725) - 533053..534129 (+) 1077 WP_013353790.1 MraY family glycosyltransferase -
  QTN45_RS02730 (QTN45_02730) - 534229..535503 (-) 1275 WP_013353789.1 LCP family protein -
  QTN45_RS02735 (QTN45_02735) - 535508..536155 (-) 648 WP_013353788.1 YigZ family protein -
  QTN45_RS02740 (QTN45_02740) degS 536378..537541 (+) 1164 WP_013353787.1 two-component sensor histidine kinase DegS Regulator
  QTN45_RS02745 (QTN45_02745) degU 537618..538307 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QTN45_RS02750 (QTN45_02750) - 538404..539252 (+) 849 WP_013353786.1 DegV family protein -
  QTN45_RS02755 (QTN45_02755) comFA 539359..540744 (+) 1386 WP_013353785.1 DEAD/DEAH box helicase Machinery gene
  QTN45_RS02760 (QTN45_02760) - 540803..541087 (+) 285 WP_013353784.1 competence protein ComFB -
  QTN45_RS02765 (QTN45_02765) - 541105..541215 (+) 111 Protein_548 amidophosphoribosyltransferase -
  QTN45_RS02770 (QTN45_02770) comFC 541348..541782 (+) 435 WP_289394470.1 phosphoribosyltransferase family protein Machinery gene
  QTN45_RS02775 (QTN45_02775) - 541856..542275 (+) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  QTN45_RS02780 (QTN45_02780) flgM 542345..542611 (+) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  QTN45_RS02785 (QTN45_02785) - 542626..543108 (+) 483 WP_013353780.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=847747 QTN45_RS02745 WP_003219701.1 537618..538307(+) (degU) [Bacillus amyloliquefaciens strain SRCM123364]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=847747 QTN45_RS02745 WP_003219701.1 537618..538307(+) (degU) [Bacillus amyloliquefaciens strain SRCM123364]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAAGCGGCTCGTATCGTCGAGCATTATCATCCCGATGTCGTCA
TAATGGATATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAGCAGCTTGTTGAGCTGTACCCTGAATCTAAGGTA
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCGGATACTTTAATCGAGGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCACCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCTGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1