Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QSJ10_RS05870 Genome accession   NZ_CP128494
Coordinates   1091330..1092574 (+) Length   414 a.a.
NCBI ID   WP_053532334.1    Uniprot ID   -
Organism   Geobacillus stearothermophilus ATCC 12980     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1086330..1097574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSJ10_RS05845 (QSJ10_05845) - 1087771..1088487 (+) 717 WP_053532333.1 SDR family oxidoreductase -
  QSJ10_RS05850 (QSJ10_05850) - 1088555..1088803 (+) 249 WP_033016862.1 DUF3243 domain-containing protein -
  QSJ10_RS05855 (QSJ10_05855) - 1088932..1089723 (+) 792 WP_033012189.1 DUF3388 domain-containing protein -
  QSJ10_RS05860 (QSJ10_05860) - 1089750..1090643 (+) 894 WP_033016821.1 RodZ domain-containing protein -
  QSJ10_RS05865 (QSJ10_05865) pgsA 1090724..1091302 (+) 579 WP_033016861.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QSJ10_RS05870 (QSJ10_05870) cinA 1091330..1092574 (+) 1245 WP_053532334.1 competence/damage-inducible protein A Machinery gene
  QSJ10_RS05875 (QSJ10_05875) - 1092752..1093039 (+) 288 Protein_1098 DNA recombination/repair protein RecA -
  QSJ10_RS05880 (QSJ10_05880) recA 1094335..1095150 (+) 816 WP_230847153.1 recombinase RecA Machinery gene
  QSJ10_RS05885 (QSJ10_05885) rny 1095583..1097139 (+) 1557 WP_033012175.1 ribonuclease Y -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44853.64 Da        Isoelectric Point: 5.7560

>NTDB_id=847689 QSJ10_RS05870 WP_053532334.1 1091330..1092574(+) (cinA) [Geobacillus stearothermophilus ATCC 12980]
MNAEIIAVGSELLLGQIANTNAQFLSQQLVALGINVYFHTVVGDNASRLEQAVKIAQTRADLVIFTGGLGPTKDDLTKET
IARLLGRRLVIDEEALRAIEVYFARTNRPMTENNKKQALVLEGSTVLKNEHGMAPGMALVADGITYMLLPGPPKEMRPMF
KKYGNAFLRRTFSLSERIESRVLRFFGIGESALETAIADLIDAQSNPTIAPLAGDGEVTLRLTAKHQDEAEAKRLLDEVE
SAILARVGRHCYGYNDETLFTKTLERLKERGWTIASAESLTGGLFLEQLTALPGASQVVQGGVVCYTNGVKEQVLGIPRP
LLEAEGAVSEPCARLLAENVRAMCDADIGISFTGVAGPDPLEGHPPGTVYVGIAVRGRDATVHRLMLSGTRDAIRIRTAK
YGCFFLLEMLAADC

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=847689 QSJ10_RS05870 WP_053532334.1 1091330..1092574(+) (cinA) [Geobacillus stearothermophilus ATCC 12980]
TTGAACGCGGAGATCATTGCCGTTGGCTCCGAACTGCTGCTCGGGCAAATTGCCAATACAAACGCCCAGTTTTTGTCGCA
GCAGCTCGTCGCCTTGGGCATTAACGTCTATTTCCATACGGTTGTCGGCGACAATGCCAGCCGCCTCGAACAGGCGGTGA
AAATTGCGCAAACGCGGGCGGACTTGGTCATTTTTACCGGAGGACTCGGCCCGACGAAAGATGACCTGACGAAAGAAACG
ATCGCCCGCCTGCTCGGCCGCCGGCTCGTGATCGACGAGGAAGCGCTCCGAGCGATTGAGGTGTATTTTGCCCGCACAAA
CCGGCCGATGACAGAAAACAATAAAAAGCAGGCGCTCGTCTTGGAAGGATCGACGGTGCTGAAAAACGAGCACGGCATGG
CGCCAGGGATGGCGCTTGTGGCAGACGGCATTACGTACATGCTGCTGCCCGGGCCGCCGAAAGAAATGCGGCCGATGTTC
AAAAAATACGGAAACGCCTTTTTGCGCCGTACGTTTTCGCTTTCCGAGCGCATCGAGTCGCGCGTCCTCCGCTTTTTCGG
CATCGGCGAGTCGGCGCTCGAGACGGCGATCGCCGACTTGATCGACGCCCAGTCGAACCCGACGATCGCGCCGCTGGCCG
GCGACGGTGAAGTGACGCTTCGTCTGACAGCGAAGCATCAGGATGAGGCGGAGGCGAAGCGGCTTCTTGACGAAGTGGAA
TCGGCCATTTTGGCGCGTGTCGGCCGCCACTGCTACGGATATAACGATGAAACGTTGTTTACAAAGACGCTCGAGCGGTT
AAAAGAAAGAGGATGGACGATCGCGTCGGCCGAAAGTTTGACCGGCGGCCTTTTCCTCGAACAGCTCACCGCCCTCCCCG
GCGCGTCGCAAGTCGTGCAGGGCGGTGTCGTCTGCTACACAAACGGCGTCAAAGAACAGGTGCTTGGCATACCGCGCCCG
CTGCTTGAGGCAGAAGGGGCGGTGAGCGAGCCGTGCGCCCGTTTGCTTGCTGAAAACGTCCGCGCGATGTGCGATGCGGA
TATCGGCATCAGCTTCACCGGCGTCGCCGGACCCGATCCGCTTGAGGGCCACCCGCCCGGCACCGTGTATGTCGGCATCG
CCGTCCGCGGGCGCGATGCGACTGTCCACCGTCTGATGCTGTCCGGCACGCGTGATGCCATTCGCATCCGCACCGCCAAA
TACGGCTGTTTTTTTCTGCTTGAGATGCTCGCGGCCGACTGCTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.413

98.792

0.587
  cinA Streptococcus mitis SK321

50.914

92.512

0.471
  cinA Streptococcus mitis NCTC 12261

50.914

92.512

0.471
  cinA Streptococcus pneumoniae TIGR4

50.392

92.512

0.466
  cinA Streptococcus pneumoniae Rx1

50.392

92.512

0.466
  cinA Streptococcus pneumoniae R6

50.392

92.512

0.466
  cinA Streptococcus pneumoniae D39

50.131

92.512

0.464
  cinA Streptococcus mutans UA159

47.619

96.377

0.459
  cinA Streptococcus suis isolate S10

42.063

91.304

0.384