Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   V4U93_RS01875 Genome accession   NZ_CP144755
Coordinates   400367..402328 (+) Length   653 a.a.
NCBI ID   WP_035146236.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain DCF0720     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 395367..407328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4U93_RS01865 (V4U93_01865) - 396912..397718 (+) 807 WP_016264637.1 TIGR00282 family metallophosphoesterase -
  V4U93_RS01870 (V4U93_01870) hexA 397740..400343 (+) 2604 WP_016264638.1 DNA mismatch repair protein MutS Machinery gene
  V4U93_RS01875 (V4U93_01875) hexB 400367..402328 (+) 1962 WP_035146236.1 DNA mismatch repair endonuclease MutL Machinery gene
  V4U93_RS01880 (V4U93_01880) - 402328..402873 (+) 546 WP_016264640.1 Maf family protein -
  V4U93_RS01885 (V4U93_01885) - 402886..403449 (+) 564 WP_016264641.1 TIGR00730 family Rossman fold protein -
  V4U93_RS01890 (V4U93_01890) ruvA 403700..404311 (+) 612 WP_016264642.1 Holliday junction branch migration protein RuvA Machinery gene
  V4U93_RS01895 (V4U93_01895) ruvB 404324..405331 (+) 1008 WP_016264643.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  V4U93_RS01900 (V4U93_01900) queA 405346..406377 (+) 1032 WP_011374077.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  V4U93_RS01905 (V4U93_01905) - 406404..406925 (+) 522 WP_016264644.1 GNAT family protein -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72847.28 Da        Isoelectric Point: 5.5255

>NTDB_id=847690 V4U93_RS01875 WP_035146236.1 400367..402328(+) (hexB) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MGKIHELSEILSNQIAAGEVIERPASVVKELVENAIDANSTQVDIVVEQAGLQMIQVIDNGDGIEPEDVPVAFKRHATSK
IATRQDLFKIQSLGFRGEALASIASVSDLTIETATADSLGTFAHFKGGLLEEQKTNPIRPGTAITVRDLFFNTPARLKYV
KTFQTELANIVDIVNRLAMSHPQIAFTLTNDDHLLLKTAGNNDLKQTIAGIYGVTMAKKLLAVSASDLDFKLTGYVSLPE
LTRATRNYLSILINRRFIKNYQLNKAIIKGYGSKLMVGRYPIAVLAIEMDPLLIDVNVHPTKQEVRLSKETALMTLIEGA
IKERLATENLIPDAMQNLKRTKTVDVDQLQMNLNQITQERRHPSGTVRPVSPMPATTVKPVTPEIAETETPLAAPTAKAP
AMTPERPLFEQPQALAEWDQKYATEAVGKPFGDQVVDETDENDETVVEPTVRFPELRYIGQLHSTFLLAEGEDGFYILDQ
HAAQERIKYEYYREKIGEVSTSVQNLLVPLVLEYPNSDALKIQEKTELLASVGIQLENFGQNSFVVHSHPTWIEQGQEEM
TIRGMIDDVLKDGRISIAQFREKTAIMMSCKQSIKAHHHLDDAQAKALLADLAKTENPFNCPHGRPVLIHYTQKDLEKMF
KRIQEPHHSWEGE

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=847690 V4U93_RS01875 WP_035146236.1 400367..402328(+) (hexB) [Latilactobacillus sakei subsp. sakei strain DCF0720]
ATGGGGAAAATTCATGAACTGTCGGAAATTCTAAGTAATCAAATTGCGGCGGGGGAAGTGATTGAACGCCCTGCCTCAGT
GGTCAAGGAATTGGTTGAAAACGCGATTGATGCCAATAGTACGCAAGTCGATATTGTTGTTGAACAGGCCGGTTTACAGA
TGATTCAAGTGATCGATAATGGTGACGGGATTGAACCAGAAGATGTGCCAGTCGCCTTTAAGCGGCATGCCACCAGTAAG
ATTGCGACTCGGCAAGATTTGTTCAAGATTCAATCGCTAGGGTTTCGGGGTGAAGCGTTAGCTAGTATCGCGTCCGTTTC
CGATTTAACGATTGAAACGGCAACTGCGGACTCTCTAGGAACCTTTGCTCATTTTAAGGGTGGTCTGTTAGAGGAACAAA
AAACAAATCCGATTCGACCGGGGACGGCGATTACGGTGCGGGATTTATTCTTTAATACACCGGCACGATTGAAATACGTG
AAGACTTTTCAAACCGAATTGGCGAATATCGTCGATATCGTCAATCGGCTAGCAATGAGCCATCCACAGATTGCTTTCAC
GCTAACCAATGATGACCATCTACTTTTAAAAACGGCCGGCAACAATGATTTAAAACAAACGATTGCTGGTATTTATGGCG
TCACCATGGCCAAGAAACTCTTAGCCGTGAGTGCTTCGGATTTAGATTTTAAACTAACGGGCTACGTGTCATTGCCGGAA
TTAACGCGGGCAACGCGCAATTATTTGTCGATTTTAATTAATCGTCGGTTTATTAAAAATTACCAATTGAATAAGGCCAT
TATCAAGGGCTACGGTTCTAAATTGATGGTCGGACGCTATCCAATCGCCGTCTTAGCGATTGAGATGGATCCGCTATTGA
TCGATGTCAACGTGCATCCAACAAAACAGGAAGTCCGCTTAAGCAAAGAAACTGCCTTGATGACCTTGATTGAAGGGGCA
ATCAAAGAAAGACTGGCAACCGAGAATTTAATTCCAGATGCCATGCAGAATTTGAAACGGACCAAGACGGTAGATGTTGA
TCAGCTCCAGATGAATTTAAACCAAATTACACAAGAACGACGGCACCCAAGCGGTACGGTGCGACCAGTCAGTCCAATGC
CAGCCACAACGGTCAAACCGGTGACACCAGAAATTGCGGAAACCGAAACGCCGTTAGCCGCACCAACTGCTAAAGCGCCG
GCGATGACACCGGAGCGGCCCTTATTTGAGCAACCCCAGGCATTGGCCGAGTGGGATCAGAAGTATGCGACCGAAGCAGT
TGGGAAGCCATTTGGTGACCAAGTGGTAGACGAAACGGACGAAAACGATGAAACCGTAGTCGAACCCACTGTTCGTTTTC
CGGAGTTACGCTACATTGGGCAACTGCACAGTACTTTCTTATTAGCGGAAGGCGAAGATGGCTTTTATATCTTGGATCAA
CACGCTGCGCAAGAACGGATTAAGTACGAGTATTACCGAGAAAAAATTGGGGAAGTCAGCACCTCTGTGCAAAACTTGTT
AGTACCGCTTGTTTTGGAATATCCGAATAGTGATGCGCTAAAGATTCAGGAAAAAACTGAACTCTTGGCGTCAGTCGGAA
TTCAATTAGAAAATTTCGGGCAGAATAGTTTTGTGGTCCACAGTCACCCAACTTGGATTGAACAGGGACAAGAGGAAATG
ACGATTCGTGGGATGATTGACGATGTTTTAAAAGACGGCCGCATTAGTATTGCTCAATTCCGTGAGAAGACGGCGATTAT
GATGAGCTGTAAGCAATCAATCAAGGCACACCATCATTTAGATGATGCCCAGGCCAAAGCGCTTTTAGCCGATCTAGCGA
AGACCGAGAATCCGTTTAATTGTCCCCACGGACGCCCGGTTTTGATTCACTACACGCAAAAAGATTTGGAAAAGATGTTT
AAACGGATTCAAGAACCACATCATAGTTGGGAGGGCGAATAA

Domains

Predicted by InterProScan.

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(208-325)

MutL C terminal dimerisation domain (MutL_C)

(456-600)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

49.697

100

0.502