Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QSJ10_RS05880 Genome accession   NZ_CP128494
Coordinates   1094335..1095150 (+) Length   271 a.a.
NCBI ID   WP_230847153.1    Uniprot ID   -
Organism   Geobacillus stearothermophilus ATCC 12980     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1089335..1100150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSJ10_RS05860 (QSJ10_05860) - 1089750..1090643 (+) 894 WP_033016821.1 RodZ domain-containing protein -
  QSJ10_RS05865 (QSJ10_05865) pgsA 1090724..1091302 (+) 579 WP_033016861.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QSJ10_RS05870 (QSJ10_05870) cinA 1091330..1092574 (+) 1245 WP_053532334.1 competence/damage-inducible protein A Machinery gene
  QSJ10_RS05875 (QSJ10_05875) - 1092752..1093039 (+) 288 Protein_1098 DNA recombination/repair protein RecA -
  QSJ10_RS05880 (QSJ10_05880) recA 1094335..1095150 (+) 816 WP_230847153.1 recombinase RecA Machinery gene
  QSJ10_RS05885 (QSJ10_05885) rny 1095583..1097139 (+) 1557 WP_033012175.1 ribonuclease Y -
  QSJ10_RS05890 (QSJ10_05890) - 1097328..1098122 (+) 795 WP_033017459.1 TIGR00282 family metallophosphoesterase -
  QSJ10_RS05895 (QSJ10_05895) spoVS 1098252..1098512 (+) 261 WP_003251598.1 stage V sporulation protein SpoVS -
  QSJ10_RS05900 (QSJ10_05900) - 1098606..1099529 (+) 924 WP_033017458.1 dipeptidase -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 29668.85 Da        Isoelectric Point: 5.0031

>NTDB_id=847690 QSJ10_RS05880 WP_230847153.1 1094335..1095150(+) (recA) [Geobacillus stearothermophilus ATCC 12980]
MKRGKIAPPGNAEGDYYLSLSLDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEG
EMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDM
VGNKTKIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDMASELDIVQKSGSWYSYKDERLGQGRENAKQFLKENPHIAE
EIARAIRKHYGIDDGEAGGEPMQDEFGLLEE

Nucleotide


Download         Length: 816 bp        

>NTDB_id=847690 QSJ10_RS05880 WP_230847153.1 1094335..1095150(+) (recA) [Geobacillus stearothermophilus ATCC 12980]
GTGAAGCGGGGGAAAATAGCCCCTCCGGGTAATGCCGAGGGTGACTATTACCTATCGCTATCGCTCGACCCCATCTATGC
ACAAAAATTAGGGGTCAATATCGATGAATTGCTGCTTTCCCAGCCTGACACGGGCGAGCAGGCGCTCGAAATCGCGGAAG
CGCTCGTGCGAAGCGGCGCGGTCGATATTATCGTCATCGACTCGGTGGCGGCGCTCGTGCCGAAAGCGGAAATTGAAGGG
GAGATGGGGGACGCTCACGTCGGCCTGCAAGCGCGGCTTATGTCCCAGGCGCTTCGCAAGCTGTCCGGCGCCATTAACAA
GTCAAAAACGATCGCCATCTTCATCAACCAAATTCGCGAAAAAGTCGGCGTCATGTTTGGCAACCCGGAAACGACGCCGG
GCGGGCGGGCGCTCAAGTTTTACGCTTCCGTCCGCCTAGAGGTTCGTCGCGCCGAGCAAATCAAGCAAGGCAATGATATG
GTCGGCAACAAGACGAAAATCAAAGTCGTCAAAAACAAAGTCGCGCCGCCGTTTAAAACGGCTGACGTCGACATTATGTA
CGGCGAGGGCATTTCCCGCGAAGGGGAAATCATCGATATGGCGTCTGAACTTGACATTGTGCAAAAAAGCGGCTCATGGT
ATTCGTACAAAGACGAACGGCTCGGCCAAGGTCGGGAGAATGCAAAACAATTTTTGAAAGAAAACCCGCATATCGCCGAA
GAAATCGCCCGCGCCATCCGCAAACATTACGGCATCGATGATGGCGAAGCAGGCGGCGAACCGATGCAAGACGAATTTGG
GCTGCTTGAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.179

86.347

0.753
  recA Latilactobacillus sakei subsp. sakei 23K

76.068

86.347

0.657
  recA Streptococcus mitis NCTC 12261

68.675

91.882

0.631
  recA Streptococcus mitis SK321

68.273

91.882

0.627
  recA Streptococcus pneumoniae D39

70

88.561

0.62
  recA Streptococcus pneumoniae TIGR4

70

88.561

0.62
  recA Streptococcus pneumoniae R6

70

88.561

0.62
  recA Streptococcus pneumoniae Rx1

70

88.561

0.62
  recA Streptococcus mutans UA159

68.644

87.085

0.598
  recA Streptococcus pyogenes NZ131

68.936

86.716

0.598
  recA Lactococcus lactis subsp. cremoris KW2

66.39

88.93

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.975

88.93

0.587
  recA Ralstonia pseudosolanacearum GMI1000

68.534

85.609

0.587
  recA Acinetobacter baumannii D1279779

62.449

90.406

0.565
  recA Acinetobacter baylyi ADP1

59.921

92.989

0.557
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.228

84.133

0.557
  recA Vibrio cholerae strain A1552

66.228

84.133

0.557
  recA Pseudomonas stutzeri DSM 10701

61.382

90.775

0.557
  recA Neisseria gonorrhoeae MS11

64.378

85.978

0.554
  recA Neisseria gonorrhoeae MS11

64.378

85.978

0.554
  recA Neisseria gonorrhoeae strain FA1090

64.378

85.978

0.554
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.09

85.978

0.542
  recA Helicobacter pylori 26695

62.931

85.609

0.539
  recA Helicobacter pylori strain NCTC11637

62.931

85.609

0.539
  recA Glaesserella parasuis strain SC1401

63.877

83.764

0.535
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.332

82.288

0.513