Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QSU95_RS13000 Genome accession   NZ_CP128204
Coordinates   2779331..2780557 (+) Length   408 a.a.
NCBI ID   WP_286211267.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ05     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2774331..2785557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU95_RS12975 (QSU95_12975) fldB 2774714..2775235 (+) 522 WP_055466520.1 flavodoxin FldB -
  QSU95_RS12980 (QSU95_12980) ampD 2775271..2775825 (-) 555 WP_286211262.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QSU95_RS12985 (QSU95_12985) nadC 2775974..2776861 (+) 888 WP_154180385.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QSU95_RS12990 (QSU95_12990) - 2777108..2777557 (+) 450 WP_055466517.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QSU95_RS12995 (QSU95_12995) pilB 2777564..2779252 (+) 1689 WP_286211265.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QSU95_RS13000 (QSU95_13000) pilC 2779331..2780557 (+) 1227 WP_286211267.1 type II secretion system F family protein Machinery gene
  QSU95_RS13005 (QSU95_13005) pilD 2780609..2781478 (+) 870 WP_014204458.1 A24 family peptidase Machinery gene
  QSU95_RS13010 (QSU95_13010) coaE 2781481..2782089 (+) 609 WP_286211270.1 dephospho-CoA kinase -
  QSU95_RS13015 (QSU95_13015) zapD 2782122..2782862 (+) 741 WP_004729090.1 cell division protein ZapD -
  QSU95_RS13020 (QSU95_13020) yacG 2782920..2783117 (+) 198 WP_004729092.1 DNA gyrase inhibitor YacG -
  QSU95_RS13025 (QSU95_13025) parC 2783210..2785483 (-) 2274 WP_004729093.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44801.06 Da        Isoelectric Point: 10.5674

>NTDB_id=846781 QSU95_RS13000 WP_286211267.1 2779331..2780557(+) (pilC) [Vibrio furnissii strain VFBJ05]
MKPNKAAELKNFRWKGINSSGRKVAGHTLAISEIEVRDKLKEQHIQVKKIKKGNISLLTRLTNRVKTRDITLLTRQLSTM
LTTGVPIVQALKLVGDNHRKAEMKSILAQVTKGVEAGTPMSKAMRTATPHFDALYVDLIATGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPAMVMLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSLWGVLATSAGLLA
LKTARNKSLVFRLKTSRLGLRFPVVGAVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQEVHRHTAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=846781 QSU95_RS13000 WP_286211267.1 2779331..2780557(+) (pilC) [Vibrio furnissii strain VFBJ05]
ATGAAACCAAATAAAGCTGCCGAATTGAAAAACTTCCGCTGGAAAGGCATCAACAGCTCCGGACGAAAAGTTGCCGGACA
CACCTTGGCCATCAGTGAAATCGAAGTGCGAGACAAGCTCAAAGAGCAGCACATTCAGGTGAAGAAGATCAAAAAGGGCA
ACATTTCACTGCTGACTCGCCTCACCAACCGCGTCAAGACTCGCGACATCACCCTGCTCACACGCCAGCTTTCCACCATG
CTGACTACAGGTGTACCCATCGTTCAAGCGTTGAAACTGGTTGGCGACAATCATCGCAAAGCAGAAATGAAATCGATTCT
GGCCCAAGTCACCAAAGGGGTAGAAGCAGGCACCCCGATGTCCAAAGCGATGCGCACTGCCACCCCACATTTTGATGCGC
TGTACGTTGACCTCATAGCCACCGGCGAGCAATCCGGGAATTTGGCCGAAGTGTTTGAGCGCCTTGCTACCTATCGAGAA
AAAAGCGAACAACTGCGCGCCAAAGTGATCAAGGCGCTGATCTATCCGGCGATGGTGATGTTGGTGGCGTTGGGCGTCTC
TTATCTGATGCTGACCATGGTCATTCCCGAGTTTGAAAGCATGTTCAAAGGCTTTGGCGCAGAGCTTCCTTGGTTTACCC
AGCAAATTCTAAAACTCTCCCACGGCGTGCAAGCCTATAGCCTATGGGGCGTACTGGCGACTAGCGCTGGCCTATTGGCG
CTCAAAACCGCGCGCAACAAATCATTGGTTTTTCGATTGAAAACCAGCCGCCTTGGCTTGCGCTTTCCTGTTGTCGGCGC
GGTATTAGCCAAGGCTGCCATTGCCAAATTCAGCCGCACATTGGCCACCAGTTTTAGCGCCGGTATACCGATTCTGGCCA
GTTTAAAAACCACCGCCAAAACCGCCGGCAACGTCCATTTTGAAACCGCGATTCAGGAGGTGCATCGCCATACCGCGGCA
GGCATGCCGATGTACATCGCCATGCGCAATACCGACGCATTTCCGGAGATGGTGCTGCAAATGGTGATGATTGGCGAAGA
GTCGGGCAAGCTTGACGACATGCTGAACAAAGTCGCGACCATTTATGAGTTTGAAGTCGACAATACCGTGGACAATCTGG
GTAAAATTCTCGAGCCACTGATCATCGTCTTTCTGGGAGTGGTCGTTGGCGGGCTGGTGGTTGCGATGTACCTCCCCATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

83.824

100

0.838
  pilC Vibrio campbellii strain DS40M4

72.953

98.775

0.721
  pilC Pseudomonas stutzeri DSM 10701

42.469

99.265

0.422
  pilC Acinetobacter baumannii D1279779

41.422

100

0.414
  pilC Legionella pneumophila strain ERS1305867

41.855

97.794

0.409
  pilC Acinetobacter baylyi ADP1

40.441

100

0.404
  pilG Neisseria gonorrhoeae MS11

39.206

98.775

0.387
  pilG Neisseria meningitidis 44/76-A

38.958

98.775

0.385