Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QSU95_RS13005 Genome accession   NZ_CP128204
Coordinates   2780609..2781478 (+) Length   289 a.a.
NCBI ID   WP_014204458.1    Uniprot ID   A0A0Q2XW48
Organism   Vibrio furnissii strain VFBJ05     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2775609..2786478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU95_RS12985 (QSU95_12985) nadC 2775974..2776861 (+) 888 WP_154180385.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QSU95_RS12990 (QSU95_12990) - 2777108..2777557 (+) 450 WP_055466517.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QSU95_RS12995 (QSU95_12995) pilB 2777564..2779252 (+) 1689 WP_286211265.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QSU95_RS13000 (QSU95_13000) pilC 2779331..2780557 (+) 1227 WP_286211267.1 type II secretion system F family protein Machinery gene
  QSU95_RS13005 (QSU95_13005) pilD 2780609..2781478 (+) 870 WP_014204458.1 A24 family peptidase Machinery gene
  QSU95_RS13010 (QSU95_13010) coaE 2781481..2782089 (+) 609 WP_286211270.1 dephospho-CoA kinase -
  QSU95_RS13015 (QSU95_13015) zapD 2782122..2782862 (+) 741 WP_004729090.1 cell division protein ZapD -
  QSU95_RS13020 (QSU95_13020) yacG 2782920..2783117 (+) 198 WP_004729092.1 DNA gyrase inhibitor YacG -
  QSU95_RS13025 (QSU95_13025) parC 2783210..2785483 (-) 2274 WP_004729093.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32195.27 Da        Isoelectric Point: 6.8269

>NTDB_id=846782 QSU95_RS13005 WP_014204458.1 2780609..2781478(+) (pilD) [Vibrio furnissii strain VFBJ05]
MDIFTFYPWLFPTLATLLGLIIGSFLNVVIYRLPKIMEREWRQDCAESFPEYHIEPPQGVLTLSTPRSTCPHCDTPIRII
DNIPVLSWLLLRGKCSQCHAPISARYPLIESFTALCSLAIALQFGFSWFAVALLFFSYVLIAATFIDFDTMLLPDQLTLP
LMWGGIALALAGISPITLQDAVIGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPIIILMSSVVGL
VFGLIQLRLQKRGIDKAFPFGPYLAIAGWLSALYGQAIVGWYFHSVLGF

Nucleotide


Download         Length: 870 bp        

>NTDB_id=846782 QSU95_RS13005 WP_014204458.1 2780609..2781478(+) (pilD) [Vibrio furnissii strain VFBJ05]
ATGGACATTTTTACTTTCTATCCCTGGCTGTTTCCCACGCTGGCCACCTTACTGGGTCTGATCATCGGCAGTTTTCTCAA
TGTGGTGATCTATCGCTTGCCGAAAATCATGGAGCGCGAGTGGCGTCAAGACTGTGCCGAGTCCTTTCCGGAATACCACA
TTGAACCGCCCCAAGGTGTGTTAACACTGAGCACGCCCCGTTCCACCTGCCCACATTGCGATACACCCATTCGTATCATT
GACAATATTCCGGTGCTGAGCTGGCTGCTACTGCGCGGCAAGTGCTCGCAGTGCCACGCGCCCATTAGCGCTCGCTACCC
ACTGATTGAATCGTTTACGGCGTTATGCAGCTTGGCGATTGCTTTGCAGTTTGGTTTTAGCTGGTTTGCGGTGGCTTTGC
TGTTTTTCAGTTATGTGCTGATTGCGGCAACCTTTATCGACTTCGACACCATGCTGCTGCCTGACCAACTGACGCTGCCG
TTGATGTGGGGCGGTATCGCACTCGCGCTAGCGGGCATCAGCCCAATCACGTTGCAAGATGCCGTGATCGGCGCGATGGC
GGGGTATCTGGCACTGTGGTCCGTCTACTGGCTGTTTAAACTGCTCACCGGCAAGGAAGGCATGGGGTACGGTGACTTTA
AGTTGTTGGCCGCGCTGGGCGCTTGGCTCGGATGGCAACAACTGCCGATCATCATTTTGATGTCTTCGGTGGTCGGCCTC
GTGTTTGGTCTGATTCAACTGCGCCTGCAAAAACGCGGCATAGATAAAGCCTTCCCGTTTGGCCCTTATCTGGCGATTGC
GGGTTGGCTGTCAGCGCTATACGGTCAGGCGATCGTTGGCTGGTATTTTCACTCCGTATTAGGATTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2XW48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

79.167

99.654

0.789
  pilD Vibrio campbellii strain DS40M4

77.431

99.654

0.772
  pilD Acinetobacter nosocomialis M2

52.574

94.118

0.495
  pilD Acinetobacter baumannii D1279779

51.812

95.502

0.495
  pilD Neisseria gonorrhoeae MS11

47.955

93.08

0.446