Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QR692_RS10210 Genome accession   NZ_CP127854
Coordinates   2069011..2069484 (-) Length   157 a.a.
NCBI ID   WP_252169994.1    Uniprot ID   -
Organism   Lactococcus petauri strain GB97     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2064011..2074484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR692_RS10185 (QR692_10185) - 2064702..2065595 (+) 894 WP_252169989.1 tyrosine-type recombinase/integrase -
  QR692_RS10190 (QR692_10190) - 2065850..2066203 (-) 354 WP_252169990.1 LPD28 domain-containing protein -
  QR692_RS10195 (QR692_10195) - 2066314..2067984 (-) 1671 WP_252169991.1 hypothetical protein -
  QR692_RS10200 (QR692_10200) - 2068048..2068395 (-) 348 WP_252169992.1 hypothetical protein -
  QR692_RS10205 (QR692_10205) - 2068456..2068920 (-) 465 WP_252169993.1 hypothetical protein -
  QR692_RS10210 (QR692_10210) ssb 2069011..2069484 (-) 474 WP_252169994.1 single-stranded DNA-binding protein Machinery gene
  QR692_RS10215 (QR692_10215) - 2070081..2070908 (-) 828 WP_252169995.1 hypothetical protein -
  QR692_RS10220 (QR692_10220) - 2070872..2071219 (-) 348 WP_252169996.1 hypothetical protein -
  QR692_RS10225 (QR692_10225) - 2071298..2071612 (-) 315 WP_252169997.1 hypothetical protein -
  QR692_RS10230 (QR692_10230) - 2071609..2073066 (-) 1458 WP_252169998.1 DNA cytosine methyltransferase -
  QR692_RS10235 (QR692_10235) - 2073044..2073184 (-) 141 WP_252169999.1 hypothetical protein -
  QR692_RS10240 (QR692_10240) - 2073235..2073876 (-) 642 WP_252170000.1 DNA adenine methylase -
  QR692_RS10245 (QR692_10245) - 2073873..2074286 (-) 414 WP_252170001.1 DUF3850 domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17560.57 Da        Isoelectric Point: 5.0270

>NTDB_id=844771 QR692_RS10210 WP_252169994.1 2069011..2069484(-) (ssb) [Lactococcus petauri strain GB97]
MINTTTLVGRLTRDPELRYTPQDTAVATFTVAVNRRFKNAQGEREADFINCVIWRKNAENLANWAKKGALIGITGSIQTR
FYENKEGKRVYVTEVVVDTFQLLESRTTRESNPHSLPEEPTQRSSFEGKSQTTPDFGGPADAFGGAPMEISDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=844771 QR692_RS10210 WP_252169994.1 2069011..2069484(-) (ssb) [Lactococcus petauri strain GB97]
ATGATCAATACAACCACACTGGTCGGAAGACTAACACGAGATCCTGAGCTTCGCTATACTCCGCAAGATACAGCGGTCGC
AACATTTACAGTTGCCGTAAATCGGCGCTTCAAAAATGCTCAAGGCGAGCGAGAGGCTGATTTCATTAACTGTGTGATTT
GGAGAAAAAATGCGGAAAACTTAGCCAATTGGGCGAAAAAAGGTGCCTTGATTGGTATTACTGGAAGCATACAAACACGC
TTTTATGAAAACAAAGAAGGGAAAAGGGTTTATGTGACCGAAGTCGTCGTGGATACTTTCCAACTTTTGGAAAGCCGGAC
AACACGAGAATCAAACCCTCATTCATTACCAGAGGAACCTACTCAAAGAAGTTCTTTTGAAGGAAAAAGTCAAACGACTC
CTGATTTTGGAGGCCCCGCAGATGCTTTTGGTGGAGCACCAATGGAAATTTCAGATGATGACCTTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

100

0.548
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.615

66.242

0.395
  ssbB/cilA Streptococcus mitis NCTC 12261

55.046

69.427

0.382
  ssbB/cilA Streptococcus pneumoniae TIGR4

55.046

69.427

0.382
  ssbB/cilA Streptococcus mitis SK321

54.128

69.427

0.376
  ssbB/cilA Streptococcus pneumoniae Rx1

54.128

69.427

0.376
  ssbB/cilA Streptococcus pneumoniae D39

54.128

69.427

0.376
  ssbB/cilA Streptococcus pneumoniae R6

54.128

69.427

0.376
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.294

69.427

0.363