Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   VZH39_RS10830 Genome accession   NZ_CP143862
Coordinates   2183749..2185029 (-) Length   426 a.a.
NCBI ID   WP_338429850.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB8     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2178749..2190029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH39_RS10815 (VZH39_10815) ligA 2179488..2181527 (-) 2040 WP_338429847.1 NAD-dependent DNA ligase LigA -
  VZH39_RS10820 (VZH39_10820) hoxE 2181651..2182148 (+) 498 WP_338429848.1 bidirectional hydrogenase complex protein HoxE -
  VZH39_RS10825 (VZH39_10825) - 2182148..2183752 (+) 1605 WP_338429849.1 NuoF family protein -
  VZH39_RS10830 (VZH39_10830) cinA 2183749..2185029 (-) 1281 WP_338429850.1 competence/damage-inducible protein A Machinery gene
  VZH39_RS10835 (VZH39_10835) - 2185033..2186112 (-) 1080 WP_338429851.1 MraY family glycosyltransferase -
  VZH39_RS10840 (VZH39_10840) glyA 2186134..2187417 (-) 1284 WP_208674676.1 serine hydroxymethyltransferase -
  VZH39_RS10845 (VZH39_10845) dusB 2187605..2188615 (-) 1011 WP_338429852.1 tRNA dihydrouridine synthase DusB -
  VZH39_RS10850 (VZH39_10850) - 2188693..2189001 (+) 309 WP_011243540.1 carbon dioxide-concentrating mechanism protein CcmK -
  VZH39_RS10855 (VZH39_10855) - 2189046..2189387 (+) 342 WP_011243539.1 carbon dioxide-concentrating mechanism protein CcmK -
  VZH39_RS10860 (VZH39_10860) - 2189499..2189870 (+) 372 WP_338429853.1 DUF1823 family protein -

Sequence

Protein


Download         Length: 426 a.a.        Molecular weight: 45573.76 Da        Isoelectric Point: 4.8581

>NTDB_id=844548 VZH39_RS10830 WP_338429850.1 2183749..2185029(-) (cinA) [Synechococcus elongatus IITB8]
MSDPRYCAEIISVGTELLLGNILNSNAQFLAEELAQLGIPHYFQTVVGDNRDRLQAAVKIAAKRSGLLIFTGGLGPTPDD
LTTETLAACFDTPLAERPEVIADIEAKFARRGRVLTDNNRKQALLPVGAELLPNPSGTAPGMIWSPRSGLTLMTFPGVPA
EMRRMWAETAVSWLHQNGWCRSILVSRLLRFWGISESALAEKVAPFFDLQNPTVAPYANNGEVKLRITAAATSEAEGQAL
IAPIEQELRVIAGRDCYGADGDSLASVVGEILRDRGQTLSVAESCTGGGLGQLITTIPGSSQWFWGGAIAYDNRVKQSLL
NVSAETLAESGAVSAAVAEQMAIGIQQRLGTTWGISITGIAGPDGGTETKPVGLVYIGIAGPSGCFSVERRWGAERGRDW
VRRLSAGDALDQLRRSLLTEDQSRLD

Nucleotide


Download         Length: 1281 bp        

>NTDB_id=844548 VZH39_RS10830 WP_338429850.1 2183749..2185029(-) (cinA) [Synechococcus elongatus IITB8]
ATGTCGGATCCCCGTTACTGCGCCGAGATTATCAGTGTCGGCACAGAATTGCTGCTGGGCAACATCCTCAACAGCAATGC
TCAGTTTTTAGCCGAAGAGCTCGCGCAACTGGGGATCCCTCACTACTTCCAAACGGTGGTGGGCGACAACCGCGATCGCT
TGCAGGCAGCGGTCAAAATTGCGGCCAAGCGATCGGGGCTGCTGATTTTCACGGGCGGTCTAGGGCCAACCCCAGATGAC
CTGACCACCGAGACTTTAGCTGCTTGTTTCGATACGCCCTTGGCCGAGCGTCCCGAGGTGATCGCTGATATTGAGGCCAA
GTTTGCGCGGCGCGGGCGGGTCTTGACCGATAACAACCGCAAGCAAGCCCTGTTACCTGTGGGGGCAGAACTGCTGCCCA
ATCCCAGCGGCACCGCCCCCGGTATGATTTGGTCGCCGCGATCGGGCCTGACGCTGATGACATTCCCTGGTGTACCGGCA
GAAATGCGCCGGATGTGGGCAGAAACAGCAGTCTCATGGCTCCATCAAAACGGTTGGTGTCGCTCAATCCTTGTTAGTCG
GCTGCTGCGATTTTGGGGCATTTCCGAGTCAGCTCTGGCCGAAAAGGTAGCGCCATTTTTTGACCTTCAAAATCCGACGG
TTGCCCCCTACGCCAACAACGGCGAAGTGAAGTTGCGGATTACAGCTGCGGCGACTTCTGAAGCAGAGGGGCAAGCCTTA
ATTGCGCCGATTGAGCAGGAATTGCGGGTGATCGCCGGTCGGGATTGCTACGGTGCCGATGGCGATAGCTTGGCCTCAGT
GGTGGGTGAGATTTTGCGCGATCGCGGTCAGACTTTGTCAGTCGCAGAATCCTGCACAGGCGGTGGCCTCGGTCAGCTGA
TCACCACCATTCCCGGCAGCTCTCAATGGTTTTGGGGTGGTGCGATCGCCTACGACAACCGCGTGAAACAATCACTCCTC
AACGTCTCGGCAGAAACCTTGGCTGAATCTGGTGCAGTCAGTGCAGCGGTTGCAGAGCAGATGGCGATCGGCATCCAACA
GCGCTTGGGGACGACTTGGGGCATCTCGATTACCGGCATTGCAGGACCGGATGGTGGCACAGAAACCAAGCCCGTGGGTT
TGGTCTACATCGGTATTGCGGGGCCATCGGGCTGCTTTAGCGTGGAGCGGCGTTGGGGTGCGGAGCGTGGGCGAGACTGG
GTGCGGCGACTGAGCGCAGGCGATGCACTCGATCAACTGCGGCGATCGCTGCTCACTGAAGACCAATCCCGGCTCGACTA
G

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(262-416)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-171)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

40.187

100

0.404
  cinA Streptococcus pneumoniae Rx1

40.426

99.296

0.401
  cinA Streptococcus pneumoniae R6

40.426

99.296

0.401
  cinA Streptococcus pneumoniae R36A

40.426

99.296

0.401
  cinA Streptococcus pneumoniae D39

40.189

99.296

0.399
  cinA Streptococcus mitis NCTC 12261

39.953

99.296

0.397
  cinA Streptococcus mitis SK321

39.953

99.296

0.397
  cinA Bacillus subtilis subsp. subtilis str. 168

43.583

87.793

0.383
  cinA Streptococcus suis isolate S10

36.993

98.357

0.364
  cinA Streptococcus mutans UA159

36.842

98.122

0.362