Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   QP512_RS15955 Genome accession   NZ_CP127407
Coordinates   3462697..3463104 (-) Length   135 a.a.
NCBI ID   WP_286072056.1    Uniprot ID   -
Organism   Stenotrophomonas sp. 57     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3457697..3468104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP512_RS15945 pilR 3459194..3460567 (+) 1374 WP_286069617.1 sigma-54 dependent transcriptional regulator Regulator
  QP512_RS15950 pilB 3460744..3462474 (-) 1731 WP_286069618.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QP512_RS15955 pilA/pilAI 3462697..3463104 (-) 408 WP_286072056.1 pilin Machinery gene
  QP512_RS15960 - 3463257..3463679 (-) 423 WP_049403031.1 pilin -
  QP512_RS15965 pilC 3464032..3465291 (+) 1260 WP_286069619.1 type II secretion system F family protein Machinery gene
  QP512_RS15970 - 3465299..3466162 (+) 864 WP_286069620.1 A24 family peptidase -
  QP512_RS15975 coaE 3466174..3466785 (+) 612 WP_286069621.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14327.64 Da        Isoelectric Point: 6.6937

>NTDB_id=844132 QP512_RS15955 WP_286072056.1 3462697..3463104(-) (pilA/pilAI) [Stenotrophomonas sp. 57]
MNTQKGFTLIELMIVVAIIAILAAIAMVAFQPYIVRTQLTAALADISPGKTLVEIVVYQGRPVSEVTPQLIGGAQNAHCS
KVEAELSESGVGHISCTLKGHSALDGKDLILRRSAEGIWSCDGSAFEARYRPTGC

Nucleotide


Download         Length: 408 bp        

>NTDB_id=844132 QP512_RS15955 WP_286072056.1 3462697..3463104(-) (pilA/pilAI) [Stenotrophomonas sp. 57]
ATGAACACACAGAAGGGCTTCACGCTCATCGAGCTGATGATCGTGGTGGCCATCATTGCCATACTTGCCGCGATCGCAAT
GGTGGCATTTCAGCCTTACATCGTTCGCACCCAGTTGACGGCCGCGCTGGCCGACATCAGCCCTGGCAAGACGCTGGTGG
AGATCGTTGTCTATCAGGGACGTCCTGTCAGTGAGGTCACACCTCAACTTATCGGCGGTGCCCAGAACGCCCACTGCTCC
AAGGTCGAAGCCGAGCTCAGCGAATCCGGCGTCGGCCACATCAGCTGCACCTTGAAAGGCCACAGCGCGCTGGACGGCAA
GGACCTGATCCTGCGCCGCTCCGCCGAGGGCATCTGGAGCTGCGATGGCAGCGCGTTCGAAGCGCGCTATCGTCCGACCG
GCTGCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

46.763

100

0.481
  pilA Acinetobacter baumannii strain A118

41.606

100

0.422
  pilA/pilAII Pseudomonas stutzeri DSM 10701

41.176

100

0.415
  pilA Pseudomonas aeruginosa PAK

35.065

100

0.4
  comP Acinetobacter baylyi ADP1

34.932

100

0.378
  pilA Haemophilus influenzae Rd KW20

35.507

100

0.363