Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QP512_RS15965 Genome accession   NZ_CP127407
Coordinates   3464032..3465291 (+) Length   419 a.a.
NCBI ID   WP_286069619.1    Uniprot ID   -
Organism   Stenotrophomonas sp. 57     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3459032..3470291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP512_RS15945 pilR 3459194..3460567 (+) 1374 WP_286069617.1 sigma-54 dependent transcriptional regulator Regulator
  QP512_RS15950 pilB 3460744..3462474 (-) 1731 WP_286069618.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QP512_RS15955 pilA/pilAI 3462697..3463104 (-) 408 WP_286072056.1 pilin Machinery gene
  QP512_RS15960 - 3463257..3463679 (-) 423 WP_049403031.1 pilin -
  QP512_RS15965 pilC 3464032..3465291 (+) 1260 WP_286069619.1 type II secretion system F family protein Machinery gene
  QP512_RS15970 - 3465299..3466162 (+) 864 WP_286069620.1 A24 family peptidase -
  QP512_RS15975 coaE 3466174..3466785 (+) 612 WP_286069621.1 dephospho-CoA kinase -
  QP512_RS15980 - 3467001..3468368 (-) 1368 WP_286069622.1 HAMP domain-containing sensor histidine kinase -
  QP512_RS15985 - 3468331..3469008 (-) 678 WP_005410804.1 response regulator transcription factor -
  QP512_RS15990 - 3469017..3469496 (-) 480 WP_286069625.1 hypothetical protein -
  QP512_RS15995 - 3469586..3470062 (-) 477 WP_286069626.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45880.32 Da        Isoelectric Point: 10.1071

>NTDB_id=844133 QP512_RS15965 WP_286069619.1 3464032..3465291(+) (pilC) [Stenotrophomonas sp. 57]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKSKPLFGAAGSPVKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKMVDTIRTDIEGGSSMYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGADLPAFTQMVVNLSRFMVSWWWL
MLLIAIGTAVGAIMAYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=844133 QP512_RS15965 WP_286069619.1 3464032..3465291(+) (pilC) [Stenotrophomonas sp. 57]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAACTGCGCCGCC
AGGGCATAAACCCGGGCCAGGTCAAGCCCAAGTCGAAACCGCTGTTCGGTGCCGCCGGCAGCCCGGTCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGATGGTCGATACCATCCGCACCGACATCGAGGGCGGCTCCTCCATGTACGAGG
CGGTCAGCAAGCATCCGGTGCAGTTCGATGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCTGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAAAACATCGAAGCGCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTGGCCATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTCGGCGCTGACCTTCCCGCCTTCACCCAGATGGTGGTGAACCTGTCGAGATTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTGATCGCGATCGGCACCGCGGTCGGTGCGATCATGGCCTACAAGCGCTCACCGAAGATGCAGCACGCGATGGA
CCGGTTCGTGCTGAAGGTTCCGGTGATCGGGCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCGCGTACCACCGCGG
TGACCTTCAAGGCCGGCGTCCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGCGCCACCGGCAATACCGTGTACGAGGAG
GCGGTGCTGCGCATGCGCGACGACGTCTCGGTGGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAAGCCGGCGCCTTGGACGCCATGCTGTTCAAGGTGGCTGAGTACTACG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAGCCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTATCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.545

94.511

0.516
  pilC Acinetobacter baylyi ADP1

51.597

97.136

0.501
  pilC Legionella pneumophila strain ERS1305867

52.13

95.227

0.496
  pilC Acinetobacter baumannii D1279779

50.123

97.136

0.487
  pilG Neisseria gonorrhoeae MS11

45.137

95.704

0.432
  pilG Neisseria meningitidis 44/76-A

44.888

95.704

0.43
  pilC Vibrio cholerae strain A1552

41.626

96.897

0.403
  pilC Vibrio campbellii strain DS40M4

41.895

95.704

0.401
  pilC Thermus thermophilus HB27

37.562

95.943

0.36