Detailed information NTG0844130

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QP512_RS15945
• Genome accession: NZ_CP127407
• Coordinates: 3459194..3460567 (+)
• Length: 457 a.a.
• NCBI ID: WP_286069617.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. 57
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3454194..3465567

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QP512_RS15930	sucD	3455096..3455971 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
QP512_RS15935	sucC	3455993..3457162 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
QP512_RS15940	-	3457520..3459133 (+)	1614	WP_286069616.1	ATP-binding protein	-
QP512_RS15945	pilR	3459194..3460567 (+)	1374	WP_286069617.1	sigma-54 dependent transcriptional regulator	Regulator
QP512_RS15950	pilB	3460744..3462474 (-)	1731	WP_286069618.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QP512_RS15955	pilA/pilAI	3462697..3463104 (-)	408	WP_286072056.1	pilin	Machinery gene
QP512_RS15960	-	3463257..3463679 (-)	423	WP_049403031.1	pilin	-
QP512_RS15965	pilC	3464032..3465291 (+)	1260	WP_286069619.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49571.85 Da
• Isoelectric Point: 6.5844

>NTDB_id=844130 QP512_RS15945 WP_286069617.1 3459194..3460567(+) (pilR) [Stenotrophomonas sp. 57]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNSERPAPGPATEQAARLLGASPAMDVLRTTISKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAHYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRTPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=844130 QP512_RS15945 WP_286069617.1 3459194..3460567(+) (pilR) [Stenotrophomonas sp. 57]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAGGCACGTGAGCTGCTGGCTAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCGGACGGCAACGGGATCGAGCTGGTCAGCGAAATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGATCTGGCGGTGGAGGCGCTGAAGGCCGGTGCCTTCGACTTCGTCAGCAAGCCAGT
GGACATCTCGGTGCTGCGTGGGCTGGTCAAGCACGCGCTGGAACTCAACAACAGCGAACGCCCTGCGCCCGGCCCCGCCA
CCGAACAGGCAGCGCGCCTGCTCGGCGCTTCGCCGGCCATGGACGTACTGCGCACCACCATCAGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGTGAATCCGGGGTTGGCAAGGAGCTGGTCGCTCGCACGATCCACGCCCAGGGTGCGCG
TGCGGCAGGGCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGTTGATGGAGAGCGAGTTCTTCGGCCACCGCA
AGGGCAGCTTCAGCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGGCGGCACACGGCGGCACCCTGTTCCTGGACGAA
GTGGCCGAACTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAGAAGTCGGTGCGCGCGGTGGGCGCGGC
CAACGAAGAGCCGGTGGACGTCCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAACTGGTCGAGGACGGGCGCTTCC
GCCACGATCTGTACTACCGCATCAACGTGATCGAGTTGAAAGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCGGAA
CTGGCCGCCGCCGTGCTGGCCCGATTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCGTCCGCGCTGGAGGC
GCTGGCCCACTATGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGCGCGCTGGCACTGGCCGAAGAAG
ACCGCATCGGTGCCGATGACCTGCGCCTGCCGCAGCACGCGCCGCGTACGCCGGGCAGTGCCGCGCCCGCCGAAGCGGTA
GCGGACCTGCAGCCGGGCAGCGCCGCCCTGCCCTCGTATATCGAGCAGCTTGAACGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAAAAAC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.061	99.781	0.619
pilR	Acinetobacter baumannii strain A118	47.732	100	0.484