Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QO259_RS06340 Genome accession   NZ_CP127244
Coordinates   1390068..1391294 (-) Length   408 a.a.
NCBI ID   WP_285952213.1    Uniprot ID   A0A9Y2DAJ8
Organism   Salinicola sp. JS01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1385068..1396294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QO259_RS06315 (QO259_06315) argJ 1385668..1386876 (+) 1209 WP_285952209.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  QO259_RS06320 (QO259_06320) - 1386958..1387911 (+) 954 WP_285952210.1 Nudix family hydrolase -
  QO259_RS06325 (QO259_06325) yacG 1388078..1388329 (-) 252 WP_051895981.1 DNA gyrase inhibitor YacG -
  QO259_RS06330 (QO259_06330) coaE 1388326..1388991 (-) 666 WP_285952211.1 dephospho-CoA kinase -
  QO259_RS06335 (QO259_06335) - 1388988..1389848 (-) 861 WP_285952212.1 A24 family peptidase -
  QO259_RS06340 (QO259_06340) pilC 1390068..1391294 (-) 1227 WP_285952213.1 type II secretion system F family protein Machinery gene
  QO259_RS06345 (QO259_06345) pilB 1391410..1393137 (-) 1728 WP_285952214.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QO259_RS06355 (QO259_06355) - 1393379..1393900 (+) 522 WP_353057319.1 pilin -
  QO259_RS06360 (QO259_06360) - 1393980..1394264 (-) 285 WP_035473735.1 hypothetical protein -
  QO259_RS06365 (QO259_06365) - 1394466..1395965 (+) 1500 WP_285952743.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44915.68 Da        Isoelectric Point: 10.6169

>NTDB_id=843032 QO259_RS06340 WP_285952213.1 1390068..1391294(-) (pilC) [Salinicola sp. JS01]
MATTAKPPKRLVMHRWHWRGKNLRGETVSGELIASEISEVRQELARQKIIVKRITRKTSPFGIGRVRQRDITLFARQLAT
MLRAGVPLLQACKVVAETLRNPAMRNLVETLGNDISAGASFSQALSRHPQRFDRMFVNMVAAGEQSGALDRMLERLASYR
EKIDTLKGRIKKALYYPIAVVAVGVGVTALLLIKVVPQFESLFAGFGAELPAFTRFTIELSELAQAHWWQALLALVVVVF
ALRRAVKRSPRFAYRVDQLLLRLPVLGSILDKGSIARFSRTLATTFNAGVPLVEALETAAGATGNRVHQRAIIGLRDDVG
DGQQLAFAMRRAGIFPIMAVQMVSIGEEAGDLDTMLDKVADFYEEEVDNQVDALTSLLEPLIIVVLGVLVGGLVASMYLP
IFQMGSAI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=843032 QO259_RS06340 WP_285952213.1 1390068..1391294(-) (pilC) [Salinicola sp. JS01]
ATGGCAACAACGGCGAAGCCTCCCAAGCGCCTGGTGATGCACCGTTGGCACTGGCGCGGCAAGAATCTGCGCGGTGAGAC
GGTGAGCGGAGAACTGATCGCCAGCGAGATCAGCGAGGTCCGCCAGGAGTTGGCGCGTCAGAAGATCATCGTCAAGCGCA
TCACGCGCAAGACCAGCCCATTCGGCATCGGCCGTGTGCGCCAGCGCGACATCACCCTGTTCGCGCGCCAGCTGGCGACC
ATGCTCCGCGCTGGCGTGCCGCTGCTGCAGGCGTGCAAGGTGGTCGCCGAGACGCTACGCAATCCGGCGATGCGCAACCT
GGTCGAGACCCTGGGCAACGACATCAGCGCCGGGGCCAGCTTCTCGCAGGCGCTATCGCGTCATCCGCAGCGCTTCGACC
GCATGTTCGTCAACATGGTCGCCGCCGGCGAGCAGTCGGGGGCGCTGGATCGTATGCTCGAGCGCCTGGCCAGCTATCGC
GAAAAGATCGACACCCTGAAGGGGCGTATCAAGAAGGCGCTCTACTACCCCATCGCGGTAGTCGCGGTGGGGGTCGGCGT
CACCGCCCTGCTGCTGATCAAGGTGGTGCCGCAGTTCGAGAGCCTGTTCGCCGGCTTCGGCGCCGAGCTACCGGCCTTCA
CCCGCTTCACCATCGAGCTCTCCGAGCTGGCCCAGGCGCACTGGTGGCAGGCACTGCTGGCGCTGGTGGTCGTGGTTTTC
GCGCTGCGCCGGGCGGTCAAGCGCTCGCCGCGTTTCGCCTATCGGGTCGACCAGCTCCTGCTGCGCCTGCCGGTGCTCGG
CAGCATTCTCGACAAGGGCTCGATCGCGCGCTTCTCGCGCACCCTGGCGACGACCTTCAATGCCGGCGTTCCGCTGGTGG
AGGCGCTCGAGACCGCCGCGGGTGCGACCGGCAACCGCGTGCACCAGCGGGCGATCATCGGCCTGCGCGACGATGTCGGC
GACGGCCAGCAGCTCGCCTTCGCCATGCGCCGGGCCGGCATCTTCCCGATCATGGCGGTGCAGATGGTGAGCATCGGTGA
GGAAGCGGGCGACCTCGACACCATGCTCGACAAGGTCGCCGACTTCTATGAAGAGGAGGTCGACAACCAGGTCGATGCGC
TCACCTCGCTGCTCGAGCCGCTGATCATCGTGGTGCTGGGGGTGCTGGTGGGCGGTCTGGTGGCGTCGATGTATCTGCCG
ATTTTTCAGATGGGCTCGGCCATTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.911

96.814

0.512
  pilC Acinetobacter baumannii D1279779

49.752

99.02

0.493
  pilC Acinetobacter baylyi ADP1

49.505

99.02

0.49
  pilC Legionella pneumophila strain ERS1305867

50.253

97.059

0.488
  pilC Vibrio cholerae strain A1552

43.596

99.51

0.434
  pilC Vibrio campbellii strain DS40M4

43.25

98.039

0.424
  pilG Neisseria gonorrhoeae MS11

41.975

99.265

0.417
  pilG Neisseria meningitidis 44/76-A

41.975

99.265

0.417
  pilC Thermus thermophilus HB27

44.51

82.598

0.368