Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JN178_RS14975 Genome accession   NZ_AP024235
Coordinates   3377398..3378609 (+) Length   403 a.a.
NCBI ID   WP_202262234.1    Uniprot ID   -
Organism   Alteromonas sp. KC3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3372398..3383609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN178_RS14945 (KUC3_29500) - 3372420..3373166 (-) 747 WP_159626852.1 GntR family transcriptional regulator -
  JN178_RS14950 (KUC3_29510) ampE 3373515..3374384 (-) 870 WP_202262231.1 beta-lactamase regulator AmpE -
  JN178_RS14955 (KUC3_29520) ampD 3374388..3374957 (-) 570 WP_202262232.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  JN178_RS14960 (KUC3_29530) - 3375090..3375608 (+) 519 WP_202262233.1 TIGR02281 family clan AA aspartic protease -
  JN178_RS14965 (KUC3_29540) nadC 3375629..3376483 (+) 855 WP_202266089.1 carboxylating nicotinate-nucleotide diphosphorylase -
  JN178_RS14970 (KUC3_29550) - 3376877..3377305 (+) 429 WP_269752164.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  JN178_RS14975 (KUC3_29560) pilC 3377398..3378609 (+) 1212 WP_202262234.1 type II secretion system F family protein Machinery gene
  JN178_RS14980 (KUC3_29570) pilD 3378657..3379568 (+) 912 WP_202262235.1 A24 family peptidase Machinery gene
  JN178_RS14985 (KUC3_29580) coaE 3379611..3380222 (+) 612 WP_202262236.1 dephospho-CoA kinase -
  JN178_RS14990 (KUC3_29590) zapD 3380466..3381218 (+) 753 WP_202262237.1 cell division protein ZapD -
  JN178_RS14995 (KUC3_29600) yacG 3381271..3381498 (+) 228 WP_159626843.1 DNA gyrase inhibitor YacG -
  JN178_RS15000 (KUC3_29610) - 3381572..3381994 (-) 423 WP_202262238.1 MerR family transcriptional regulator -
  JN178_RS15005 (KUC3_29620) - 3382081..3383319 (+) 1239 WP_202262239.1 NADH:flavin oxidoreductase/NADH oxidase family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43729.38 Da        Isoelectric Point: 9.4253

>NTDB_id=84186 JN178_RS14975 WP_202262234.1 3377398..3378609(+) (pilC) [Alteromonas sp. KC3]
MAKAATTFTWQGKDRHGQSRKGEISAVSISEAKNLLRRQGISANKVKKLATPLFGGGGQKITPADISVISRQIATMLAAG
VTLIQSLEMIAQGHAKQSMRKLLGEITEEVKSGNPLSSALRKHPLYFDDLYCDLVYTGEQSGALETIYDRIATYKEKAEA
LKSKIKKAMFYPIAVLVVAFIVTTILLIFVVPQFEEIFSSFGAELPAFTQFVLGISRFVQDYGIFIAIGIGAAGFMFMRT
YKRSQKLRDSVDRNILKIPVVGEILKKASIARFTRTLATTFAAGVPLIGALESAAGASGNAVYREAILYMRKEVAGGMPM
HVAMRATQVFPDMVTQMIAIGEESGAVDEMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFQMG
DVV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=84186 JN178_RS14975 WP_202262234.1 3377398..3378609(+) (pilC) [Alteromonas sp. KC3]
ATGGCAAAAGCAGCAACTACATTTACTTGGCAAGGTAAAGATCGTCACGGTCAATCTCGCAAAGGTGAAATATCCGCTGT
TTCGATTTCTGAAGCAAAGAACCTGCTTCGCCGCCAGGGCATCTCTGCCAACAAAGTTAAAAAACTCGCCACGCCTTTGT
TTGGTGGTGGTGGTCAAAAAATAACCCCCGCAGACATATCCGTAATTTCTCGCCAAATTGCCACTATGTTGGCCGCCGGT
GTTACCCTAATTCAATCACTTGAGATGATAGCGCAAGGTCATGCCAAGCAAAGCATGCGAAAGTTACTGGGCGAAATAAC
GGAAGAAGTAAAATCAGGTAACCCGTTATCTTCAGCCCTTAGAAAACACCCGCTTTACTTCGACGACTTGTATTGTGATT
TGGTGTATACCGGTGAGCAGTCCGGTGCGCTTGAAACTATCTACGATAGAATAGCTACTTATAAAGAAAAAGCAGAAGCG
TTAAAATCAAAAATTAAGAAAGCGATGTTTTACCCTATCGCGGTATTGGTCGTGGCTTTCATCGTTACCACCATACTGCT
GATTTTTGTTGTTCCTCAGTTTGAAGAGATCTTTAGTAGCTTTGGTGCCGAGTTACCTGCTTTTACACAATTCGTTCTAG
GCATTTCGCGATTTGTCCAAGACTACGGCATCTTTATAGCCATCGGAATAGGTGCTGCCGGTTTTATGTTCATGCGAACC
TATAAGCGCAGCCAAAAATTGCGCGACAGCGTTGATAGAAACATTCTTAAAATTCCGGTAGTGGGCGAAATACTTAAAAA
AGCCAGTATAGCTCGCTTCACTCGTACACTAGCCACAACCTTTGCTGCAGGTGTTCCACTTATTGGGGCGTTAGAATCTG
CTGCAGGCGCTTCAGGTAATGCAGTATATCGAGAGGCTATTTTATACATGCGAAAGGAAGTGGCTGGTGGTATGCCAATG
CATGTTGCTATGCGCGCAACACAAGTATTCCCTGATATGGTCACACAAATGATAGCTATTGGTGAAGAGTCAGGCGCAGT
CGACGAAATGCTCAGTAAAATTGCTACTATTTACGAAGCGGAAGTCGATGACATGGTAGATGGCTTAACCAGCTTACTAG
AGCCTATGATCATGGCGGTATTAGGTGTGGTTATCGGCGGTTTGATCGTTGCTATGTATCTCCCTATTTTCCAAATGGGC
GACGTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(70-192)

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.794

98.759

0.581
  pilC Acinetobacter baumannii D1279779

53.102

100

0.531
  pilC Acinetobacter baylyi ADP1

52.645

98.511

0.519
  pilC Legionella pneumophila strain ERS1305867

51.385

98.511

0.506
  pilC Vibrio cholerae strain A1552

45.844

98.511

0.452
  pilG Neisseria meningitidis 44/76-A

44.691

100

0.449
  pilG Neisseria gonorrhoeae MS11

44.444

100

0.447
  pilC Vibrio campbellii strain DS40M4

43.325

98.511

0.427
  pilC Thermus thermophilus HB27

36.409

99.504

0.362

Multiple sequence alignment