Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NL111_RS02050 Genome accession   NZ_CP127012
Coordinates   432312..432758 (+) Length   148 a.a.
NCBI ID   WP_285110387.1    Uniprot ID   -
Organism   Pediococcus sp. AC40     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 427312..437758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL111_RS02005 - 427401..427616 (+) 216 WP_285110383.1 hypothetical protein -
  NL111_RS02010 - 427698..428165 (+) 468 WP_285110384.1 helix-turn-helix transcriptional regulator -
  NL111_RS02015 - 428147..428419 (+) 273 WP_128472030.1 hypothetical protein -
  NL111_RS02020 - 428430..428573 (+) 144 WP_159208631.1 hypothetical protein -
  NL111_RS02025 - 428666..429559 (+) 894 WP_285110385.1 DUF1351 domain-containing protein -
  NL111_RS02030 - 429562..430398 (+) 837 WP_274803648.1 ERF family protein -
  NL111_RS02035 - 430391..431227 (+) 837 WP_285110386.1 helix-turn-helix domain-containing protein -
  NL111_RS02040 - 431232..431954 (+) 723 WP_021361655.1 putative HNHc nuclease -
  NL111_RS02045 - 431899..432309 (+) 411 WP_152688843.1 hypothetical protein -
  NL111_RS02050 ssb 432312..432758 (+) 447 WP_285110387.1 single-stranded DNA-binding protein Machinery gene
  NL111_RS02055 - 432769..432966 (+) 198 WP_159225215.1 hypothetical protein -
  NL111_RS02060 - 432959..433201 (+) 243 WP_159225214.1 hypothetical protein -
  NL111_RS02065 - 433807..434229 (+) 423 WP_285110388.1 ArpU family phage packaging/lysis transcriptional regulator -
  NL111_RS02080 - 434848..435024 (+) 177 WP_200834126.1 hypothetical protein -
  NL111_RS02085 - 435024..435710 (+) 687 WP_285110389.1 terminase -
  NL111_RS02090 - 435676..437007 (+) 1332 WP_285110390.1 PBSX family phage terminase large subunit -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16693.39 Da        Isoelectric Point: 5.1660

>NTDB_id=841199 NL111_RS02050 WP_285110387.1 432312..432758(+) (ssb) [Pediococcus sp. AC40]
MINRTVLVGRLTKDPEIRYTQSGMAVANFTMAVNRQFTNANGEREADFISCIVWRKAAENFCNYTHKGSLVGIDGRIQTS
MYEKEGQRVYSTQVVVDSFSLLEPKQQSQQRGQQSNASNALHDNFGQPANNYSQNNDDFGIDDNDLPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=841199 NL111_RS02050 WP_285110387.1 432312..432758(+) (ssb) [Pediococcus sp. AC40]
ATGATTAATCGAACCGTATTAGTCGGTCGCCTAACCAAGGATCCAGAAATCCGTTACACCCAATCAGGGATGGCGGTGGC
CAACTTTACTATGGCCGTGAACCGGCAGTTCACCAACGCTAATGGCGAGCGAGAAGCGGACTTTATCAGCTGTATTGTCT
GGAGAAAGGCGGCCGAAAACTTCTGTAATTACACGCATAAAGGATCATTGGTCGGGATTGACGGTCGGATCCAAACGAGT
ATGTACGAGAAGGAAGGCCAGCGTGTTTACTCAACACAAGTGGTCGTAGATAGCTTCTCATTGTTAGAACCGAAACAGCA
GAGCCAACAACGTGGCCAGCAATCTAACGCTAGCAATGCTTTGCATGACAATTTTGGACAGCCTGCTAACAATTACAGCC
AGAATAATGACGATTTCGGCATTGATGATAATGATTTGCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

54.651

100

0.635
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

100

0.581
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.455

74.324

0.412
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.541

100

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

38.514

100

0.385
  ssbB/cilA Streptococcus mitis NCTC 12261

38.514

100

0.385
  ssbB/cilA Streptococcus pneumoniae Rx1

37.838

100

0.378
  ssbB/cilA Streptococcus pneumoniae D39

37.838

100

0.378
  ssbB/cilA Streptococcus pneumoniae R6

37.838

100

0.378
  ssbB/cilA Streptococcus mitis SK321

37.838

100

0.378