Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QPX65_RS12670 Genome accession   NZ_CP126698
Coordinates   2667214..2668440 (+) Length   408 a.a.
NCBI ID   WP_013571139.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV2018     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2662214..2673440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX65_RS12650 (QPX65_12650) ampD 2663265..2663837 (-) 573 WP_285454496.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QPX65_RS12655 (QPX65_12655) nadC 2663930..2664817 (+) 888 WP_013571142.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QPX65_RS12660 (QPX65_12660) - 2665040..2665468 (+) 429 WP_224655347.1 pilin -
  QPX65_RS12665 (QPX65_12665) pilB 2665478..2667166 (+) 1689 WP_285454503.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QPX65_RS12670 (QPX65_12670) pilC 2667214..2668440 (+) 1227 WP_013571139.1 type II secretion system F family protein Machinery gene
  QPX65_RS12675 (QPX65_12675) pilD 2668534..2669403 (+) 870 WP_285454506.1 A24 family peptidase Machinery gene
  QPX65_RS12680 (QPX65_12680) coaE 2669405..2670013 (+) 609 WP_285454508.1 dephospho-CoA kinase -
  QPX65_RS12685 (QPX65_12685) zapD 2670046..2670786 (+) 741 WP_011079546.1 cell division protein ZapD -
  QPX65_RS12690 (QPX65_12690) yacG 2670849..2671043 (+) 195 WP_011079545.1 DNA gyrase inhibitor YacG -
  QPX65_RS12695 (QPX65_12695) rplS 2671251..2671604 (-) 354 WP_011079544.1 50S ribosomal protein L19 -
  QPX65_RS12700 (QPX65_12700) trmD 2671646..2672395 (-) 750 WP_017421188.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QPX65_RS12705 (QPX65_12705) rimM 2672423..2672971 (-) 549 WP_011079542.1 ribosome maturation factor RimM -
  QPX65_RS12710 (QPX65_12710) rpsP 2672987..2673235 (-) 249 WP_011079541.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45239.51 Da        Isoelectric Point: 10.3244

>NTDB_id=839649 QPX65_RS12670 WP_013571139.1 2667214..2668440(+) (pilC) [Vibrio vulnificus strain VV2018]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLSTM
LTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTQVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVAAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=839649 QPX65_RS12670 WP_013571139.1 2667214..2668440(+) (pilC) [Vibrio vulnificus strain VV2018]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCTGGAAAAAAAGTCTCCGGCAA
CACGCTGGCGCTCACCGAGCTTGAGGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTCTTCACAAGGTTAAGCCATAAAGTCAAAGGCAAAGACATCACACTGCTTACCCGCCAACTCTCCACCATG
CTGACCACTGGTGTCCCTATTCTCCAATCACTTAAATTGGTTGCTGACAACCATCGCAAAGCCGAGATGAAGTCGATTTT
AGCCAATGTGAGCAAAGCCGTTGAAGCGGGCACGCCATTATCGAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGCCTCGCTTTTTATCGAGAA
AAAAATGAGCAGTTGCGAGCAAAAGTAATCAAGGCGCTGATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGGGTCTC
TTATTTAATGCTGACTCAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCAGAACTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTCATTACGTTGTTCAGCGCTATCTATTTA
CTTCGCGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAGATCCCTGTGATTGGTGG
GGTCTTATCCAAAGCGGCGATTGCCAAATTTAGCCGCACATTGGCCACCAGTTTCAGTGCAGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTGCATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCAGCC
GGGATGCCAATGTACATCGCCATGCGCAACAGCCTTGCTTTCCCAGAATTGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGATGATATGCTCAACAAAATTGCCACCATCTATGAGTTTGAAGTGGATAACACCGTCGACAACCTCG
GTAAAATTCTCGAGCCGTTGATCATCGTCTTTCTGGGCGTTGTCGTCGGCGGATTGGTCGCCGCAATGTACTTGCCGATC
TTTAATTTAATGAGTGTTCTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.25

98.039

0.767
  pilC Vibrio campbellii strain DS40M4

74.314

98.284

0.73
  pilG Neisseria gonorrhoeae MS11

41.294

98.529

0.407
  pilC Pseudomonas stutzeri DSM 10701

41.089

99.02

0.407
  pilG Neisseria meningitidis 44/76-A

41.045

98.529

0.404
  pilC Acinetobacter baumannii D1279779

39.512

100

0.397
  pilC Acinetobacter baylyi ADP1

40.351

97.794

0.395
  pilC Legionella pneumophila strain ERS1305867

39.851

99.02

0.395