Detailed information NTG0839650

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QPX65_RS12675
• Genome accession: NZ_CP126698
• Coordinates: 2668534..2669403 (+)
• Length: 289 a.a.
• NCBI ID: WP_285454506.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain VV2018
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2663534..2674403

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QPX65_RS12655 (QPX65_12655)	nadC	2663930..2664817 (+)	888	WP_013571142.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QPX65_RS12660 (QPX65_12660)	-	2665040..2665468 (+)	429	WP_224655347.1	pilin	-
QPX65_RS12665 (QPX65_12665)	pilB	2665478..2667166 (+)	1689	WP_285454503.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QPX65_RS12670 (QPX65_12670)	pilC	2667214..2668440 (+)	1227	WP_013571139.1	type II secretion system F family protein	Machinery gene
QPX65_RS12675 (QPX65_12675)	pilD	2668534..2669403 (+)	870	WP_285454506.1	A24 family peptidase	Machinery gene
QPX65_RS12680 (QPX65_12680)	coaE	2669405..2670013 (+)	609	WP_285454508.1	dephospho-CoA kinase	-
QPX65_RS12685 (QPX65_12685)	zapD	2670046..2670786 (+)	741	WP_011079546.1	cell division protein ZapD	-
QPX65_RS12690 (QPX65_12690)	yacG	2670849..2671043 (+)	195	WP_011079545.1	DNA gyrase inhibitor YacG	-
QPX65_RS12695 (QPX65_12695)	rplS	2671251..2671604 (-)	354	WP_011079544.1	50S ribosomal protein L19	-
QPX65_RS12700 (QPX65_12700)	trmD	2671646..2672395 (-)	750	WP_017421188.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
QPX65_RS12705 (QPX65_12705)	rimM	2672423..2672971 (-)	549	WP_011079542.1	ribosome maturation factor RimM	-
QPX65_RS12710 (QPX65_12710)	rpsP	2672987..2673235 (-)	249	WP_011079541.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32293.33 Da
• Isoelectric Point: 6.4630

>NTDB_id=839650 QPX65_RS12675 WP_285454506.1 2668534..2669403(+) (pilD) [Vibrio vulnificus strain VV2018]
MDALQYYPWLYIALASLFGLLVGSFLNVVIYRLPKIMELEWRQECAESFPEYNITPPTETLTLSTPRSSCPSCHTPIRVR
DNIPIFSWLALRGKCHHCQTKISARYPFVEALSAFLCGLVAWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALLEISPVSLQDSVFGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSVVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLIGA

Nucleotide

• Length: 870 bp

>NTDB_id=839650 QPX65_RS12675 WP_285454506.1 2668534..2669403(+) (pilD) [Vibrio vulnificus strain VV2018]
ATGGACGCGTTACAATACTACCCTTGGCTTTATATTGCTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGTCTACCGAAAATAATGGAACTGGAGTGGCGCCAAGAGTGTGCTGAGTCCTTTCCTGAATACAACA
TCACACCACCGACAGAAACCCTAACATTAAGCACGCCGCGCTCAAGTTGTCCTTCGTGCCATACCCCAATACGAGTTCGA
GATAATATTCCTATCTTTAGTTGGTTAGCACTAAGAGGAAAATGTCACCATTGCCAGACGAAAATCAGTGCTCGGTATCC
TTTTGTTGAAGCACTGAGCGCCTTTTTGTGCGGCCTAGTCGCTTGGAAGTTCGGTTATGCACCGATTACCGTAGCACTGA
TTGGTTTTACTTTGGTGTTGATCGCCGCCACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAGCTCACGCTGCCG
CTGACGTGGGCAGGCATCGCGCTAGCGTTACTAGAGATAAGTCCAGTATCTCTGCAAGATTCAGTGTTCGGCGCGATGGC
AGGCTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCCGCTTGCTGACAGGAAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATACCTACCGATGATCATCTTACTCTCTTCGGTTGTCGGGCTG
ATCTTTGGTCTCATTCAACTCAGATTGCAAAAGCAAGGCATTGAGATGGCTTTTCCATTTGGGCCTTATCTGGCCATTGC
TGGTTGGGTCGCCTTGATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAACTATCTTATAGGGGCGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	76.471	100	0.765
pilD	Vibrio cholerae strain A1552	71.528	99.654	0.713
pilD	Acinetobacter nosocomialis M2	54.71	95.502	0.522
pilD	Acinetobacter baumannii D1279779	54.348	95.502	0.519
pilD	Neisseria gonorrhoeae MS11	48.014	95.848	0.46