Detailed information NTG0839627

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: QMY06_RS07755
• Genome accession: NZ_CP126697
• Coordinates: 1568649..1569080 (-)
• Length: 143 a.a.
• NCBI ID: WP_285089319.1
• Uniprot ID: -
• Organism: Pediococcus acidilactici strain F1493
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1563649..1574080

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMY06_RS07715 (QMY06_07715)	-	1564417..1565103 (-)	687	WP_032540563.1	terminase	-
QMY06_RS07720 (QMY06_07720)	-	1565172..1565840 (-)	669	WP_065124798.1	hypothetical protein	-
QMY06_RS07730 (QMY06_07730)	-	1566453..1566884 (-)	432	WP_195459151.1	ArpU family phage packaging/lysis transcriptional regulator	-
QMY06_RS07735 (QMY06_07735)	-	1567223..1567750 (-)	528	WP_285089314.1	hypothetical protein	-
QMY06_RS07740 (QMY06_07740)	-	1567827..1568051 (-)	225	WP_285089316.1	hypothetical protein	-
QMY06_RS07745 (QMY06_07745)	-	1568048..1568410 (-)	363	WP_285089317.1	hypothetical protein	-
QMY06_RS07750 (QMY06_07750)	-	1568410..1568637 (-)	228	WP_285089318.1	hypothetical protein	-
QMY06_RS07755 (QMY06_07755)	ssb	1568649..1569080 (-)	432	WP_285089319.1	single-stranded DNA-binding protein	Machinery gene
QMY06_RS07760 (QMY06_07760)	-	1569083..1569490 (-)	408	WP_285089321.1	hypothetical protein	-
QMY06_RS07765 (QMY06_07765)	-	1569435..1570157 (-)	723	WP_285089322.1	putative HNHc nuclease	-
QMY06_RS07770 (QMY06_07770)	-	1570162..1570995 (-)	834	WP_285089323.1	helix-turn-helix domain-containing protein	-
QMY06_RS07775 (QMY06_07775)	-	1570988..1571824 (-)	837	WP_285089324.1	ERF family protein	-
QMY06_RS07780 (QMY06_07780)	-	1571827..1572720 (-)	894	WP_285089325.1	DUF1351 domain-containing protein	-
QMY06_RS07785 (QMY06_07785)	-	1572813..1572956 (-)	144	WP_159225408.1	hypothetical protein	-
QMY06_RS07790 (QMY06_07790)	-	1572968..1573240 (-)	273	WP_285089327.1	hypothetical protein	-
QMY06_RS07795 (QMY06_07795)	-	1573222..1573689 (-)	468	WP_159208944.1	helix-turn-helix transcriptional regulator	-
QMY06_RS07800 (QMY06_07800)	-	1573772..1573987 (-)	216	WP_159208945.1	hypothetical protein	-

Sequence

Protein

• Length: 143 a.a.
• Molecular weight: 16114.75 Da
• Isoelectric Point: 4.8890

>NTDB_id=839627 QMY06_RS07755 WP_285089319.1 1568649..1569080(-) (ssb) [Pediococcus acidilactici strain F1493]
MINRTVLVGRLTKDPEIRYTQSGMAVANFTMAVNRQFTNANGEREADFISCIVWRKAAENFCNYTHKGSLVGIDGRIQTS
TYEKEGQRVYSTQVVVDSFSLLEPKQQSQQRGQQSNASDALHDNFGQPANNNDFDIDDNDLPF

Nucleotide

• Length: 432 bp

>NTDB_id=839627 QMY06_RS07755 WP_285089319.1 1568649..1569080(-) (ssb) [Pediococcus acidilactici strain F1493]
ATGATTAATCGAACCGTATTAGTCGGTCGCCTAACCAAGGATCCAGAAATCCGTTATACCCAATCAGGGATGGCGGTGGC
CAACTTTACTATGGCCGTGAACCGGCAGTTCACCAACGCTAATGGCGAGCGAGAAGCCGACTTTATCAGCTGTATTGTCT
GGAGAAAGGCAGCCGAAAACTTCTGTAATTACACGCATAAAGGATCATTGGTCGGGATTGACGGTCGGATCCAAACGAGT
ACGTACGAGAAGGAAGGCCAGCGTGTTTACTCAACACAAGTGGTCGTAGATAGCTTCTCATTGTTAGAACCGAAACAGCA
GAGCCAACAACGTGGCCAGCAATCTAACGCTAGCGATGCTTTGCATGACAATTTTGGACAGCCTGCTAACAATAACGATT
TTGATATCGATGACAACGATCTGCCATTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-101)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	53.529	100	0.636
ssbA	Bacillus subtilis subsp. subtilis str. 168	46.893	100	0.58
ssbB	Bacillus subtilis subsp. subtilis str. 168	55.455	76.923	0.427
ssbB	Streptococcus sobrinus strain NIDR 6715-7	41.958	100	0.42
ssbB/cilA	Streptococcus mitis NCTC 12261	39.86	100	0.399
ssbB/cilA	Streptococcus pneumoniae TIGR4	39.86	100	0.399
ssbB/cilA	Streptococcus pneumoniae Rx1	39.161	100	0.392
ssbB/cilA	Streptococcus pneumoniae D39	39.161	100	0.392
ssbB/cilA	Streptococcus pneumoniae R6	39.161	100	0.392
ssbB/cilA	Streptococcus mitis SK321	39.161	100	0.392