Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | LLUL007_RS02320 | Genome accession | NZ_CP126569 |
| Coordinates | 448780..449169 (+) | Length | 129 a.a. |
| NCBI ID | WP_396426045.1 | Uniprot ID | - |
| Organism | Lactococcus cremoris strain UL007 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 443780..454169
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLUL007_RS02295 (LLUL007_02270) | pepA | 444639..445706 (-) | 1068 | WP_011675458.1 | glutamyl aminopeptidase | - |
| LLUL007_RS02300 (LLUL007_02275) | - | 445809..446093 (+) | 285 | WP_396426044.1 | hypothetical protein | - |
| LLUL007_RS02305 (LLUL007_02280) | - | 446138..446455 (+) | 318 | WP_011675460.1 | thioredoxin family protein | - |
| LLUL007_RS02310 (LLUL007_02285) | ytpR | 446561..447187 (+) | 627 | WP_011675461.1 | YtpR family tRNA-binding protein | - |
| LLUL007_RS02315 (LLUL007_02290) | nox | 447349..448689 (+) | 1341 | WP_021216210.1 | H2O-forming NADH oxidase | - |
| LLUL007_RS02320 (LLUL007_02295) | ssbB | 448780..449169 (+) | 390 | WP_396426045.1 | single-stranded DNA-binding protein | Machinery gene |
| LLUL007_RS02325 (LLUL007_02300) | groES | 449288..449572 (+) | 285 | WP_011675464.1 | co-chaperone GroES | - |
| LLUL007_RS02330 (LLUL007_02305) | groL | 449659..451287 (+) | 1629 | WP_396426046.1 | chaperonin GroEL | - |
| LLUL007_RS02335 (LLUL007_02310) | - | 451339..452151 (-) | 813 | WP_011675466.1 | MBL fold metallo-hydrolase | - |
| LLUL007_RS02340 (LLUL007_02315) | - | 452341..453768 (-) | 1428 | WP_396426047.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14731.82 Da Isoelectric Point: 6.9865
>NTDB_id=838717 LLUL007_RS02320 WP_396426045.1 448780..449169(+) (ssbB) [Lactococcus cremoris strain UL007]
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIILWGKSAETFVSYAKKGSLISVEGEIRTRN
YTDKNEQKHCITEILGLSYDLLESRATLALRESVVNFEELLLEADELPF
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIILWGKSAETFVSYAKKGSLISVEGEIRTRN
YTDKNEQKHCITEILGLSYDLLESRATLALRESVVNFEELLLEADELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=838717 LLUL007_RS02320 WP_396426045.1 448780..449169(+) (ssbB) [Lactococcus cremoris strain UL007]
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTCGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGTTGTAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTCGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGTTGTAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
96.124 |
100 |
0.961 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
59.231 |
100 |
0.597 |
| ssbA | Streptococcus mutans UA159 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis SK321 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
55.385 |
100 |
0.558 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
41.964 |
86.822 |
0.364 |