Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LLUL007_RS02320 Genome accession   NZ_CP126569
Coordinates   448780..449169 (+) Length   129 a.a.
NCBI ID   WP_396426045.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UL007     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 448780..457100 448780..449169 within 0


Gene organization within MGE regions


Location: 448780..457100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUL007_RS02320 (LLUL007_02295) ssbB 448780..449169 (+) 390 WP_396426045.1 single-stranded DNA-binding protein Machinery gene
  LLUL007_RS02325 (LLUL007_02300) groES 449288..449572 (+) 285 WP_011675464.1 co-chaperone GroES -
  LLUL007_RS02330 (LLUL007_02305) groL 449659..451287 (+) 1629 WP_396426046.1 chaperonin GroEL -
  LLUL007_RS02335 (LLUL007_02310) - 451339..452151 (-) 813 WP_011675466.1 MBL fold metallo-hydrolase -
  LLUL007_RS02340 (LLUL007_02315) - 452341..453768 (-) 1428 WP_396426047.1 ATP-binding protein -
  LLUL007_RS02345 (LLUL007_02320) yycF 453761..454462 (-) 702 WP_003131580.1 response regulator YycF -
  LLUL007_RS02350 (LLUL007_02325) tmk 454640..455275 (+) 636 WP_015082045.1 dTMP kinase -
  LLUL007_RS02355 (LLUL007_02330) - 455408..456268 (+) 861 WP_011675470.1 DNA polymerase III subunit delta' -
  LLUL007_RS02360 (LLUL007_02335) ricT 456318..457100 (+) 783 WP_011834464.1 stage 0 sporulation family protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14731.82 Da        Isoelectric Point: 6.9865

>NTDB_id=838717 LLUL007_RS02320 WP_396426045.1 448780..449169(+) (ssbB) [Lactococcus cremoris strain UL007]
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIILWGKSAETFVSYAKKGSLISVEGEIRTRN
YTDKNEQKHCITEILGLSYDLLESRATLALRESVVNFEELLLEADELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=838717 LLUL007_RS02320 WP_396426045.1 448780..449169(+) (ssbB) [Lactococcus cremoris strain UL007]
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTCGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGTTGTAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

96.124

100

0.961
  ssbB Streptococcus sobrinus strain NIDR 6715-7

59.231

100

0.597
  ssbA Streptococcus mutans UA159

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.154

100

0.566
  ssbB/cilA Streptococcus mitis SK321

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae R6

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae Rx1

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae D39

55.385

100

0.558
  ssbB/cilA Streptococcus mitis NCTC 12261

55.385

100

0.558
  ssb Latilactobacillus sakei subsp. sakei 23K

41.964

86.822

0.364