Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LL303_RS02380 Genome accession   NZ_CP126467
Coordinates   442561..442950 (+) Length   129 a.a.
NCBI ID   WP_023163755.1    Uniprot ID   A0AAQ0U0J8
Organism   Lactococcus lactis subsp. lactis strain 303     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 442561..449048 442561..442950 within 0


Gene organization within MGE regions


Location: 442561..449048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL303_RS02380 (LL303_02385) ssbB 442561..442950 (+) 390 WP_023163755.1 single-stranded DNA-binding protein Machinery gene
  LL303_RS02385 (LL303_02390) groES 443070..443354 (+) 285 WP_003131589.1 co-chaperone GroES -
  LL303_RS02390 (LL303_02395) groL 443442..445070 (+) 1629 WP_003131585.1 chaperonin GroEL -
  LL303_RS02395 (LL303_02400) - 445116..445928 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase -
  LL303_RS02400 (LL303_02405) - 446099..447541 (-) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK -
  LL303_RS02405 (LL303_02410) yycF 447534..448235 (-) 702 WP_003131580.1 response regulator YycF -
  LL303_RS02410 (LL303_02415) tmk 448413..449048 (+) 636 WP_012897230.1 dTMP kinase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14662.70 Da        Isoelectric Point: 8.3705

>NTDB_id=838015 LL303_RS02380 WP_023163755.1 442561..442950(+) (ssbB) [Lactococcus lactis subsp. lactis strain 303]
MNKTMLIGRLTSASEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=838015 LL303_RS02380 WP_023163755.1 442561..442950(+) (ssbB) [Lactococcus lactis subsp. lactis strain 303]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGTCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTGGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

89.922

100

0.899
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60

100

0.605
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae R6

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae Rx1

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae D39

55.385

100

0.558
  ssbB/cilA Streptococcus mitis SK321

55.385

100

0.558
  ssbA Streptococcus mutans UA159

54.615

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

43.75

86.822

0.38