Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   P7644_RS04615 Genome accession   NZ_CP126238
Coordinates   991783..993000 (-) Length   405 a.a.
NCBI ID   WP_404301874.1    Uniprot ID   -
Organism   Alicycliphilus denitrificans strain Ylb10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 986783..998000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7644_RS04585 (P7644_04570) - 987880..988752 (+) 873 WP_404301869.1 ATP-binding protein -
  P7644_RS04590 (P7644_04575) - 988749..989186 (+) 438 WP_404301870.1 NUDIX domain-containing protein -
  P7644_RS04595 (P7644_04580) - 989250..989471 (-) 222 WP_404303116.1 DNA gyrase inhibitor YacG -
  P7644_RS04600 (P7644_04585) zapD 989480..990235 (-) 756 WP_404301871.1 cell division protein ZapD -
  P7644_RS04605 (P7644_04590) coaE 990263..990898 (-) 636 WP_404301872.1 dephospho-CoA kinase -
  P7644_RS04610 (P7644_04595) pilD 990899..991783 (-) 885 WP_404301873.1 prepilin peptidase Machinery gene
  P7644_RS04615 (P7644_04600) pilC 991783..993000 (-) 1218 WP_404301874.1 type II secretion system F family protein Machinery gene
  P7644_RS04620 (P7644_04605) pilF 993022..994761 (-) 1740 WP_404301876.1 type IV-A pilus assembly ATPase PilB Machinery gene
  P7644_RS04625 (P7644_04610) - 994907..995131 (-) 225 WP_404301877.1 twin transmembrane helix small protein -
  P7644_RS04630 (P7644_04615) - 995147..995911 (+) 765 WP_404301878.1 SURF1 family protein -
  P7644_RS04635 (P7644_04620) - 995853..996551 (+) 699 WP_404301879.1 hypothetical protein -
  P7644_RS04640 (P7644_04625) - 996548..997723 (+) 1176 WP_404301881.1 heme A synthase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44380.25 Da        Isoelectric Point: 9.3922

>NTDB_id=837229 P7644_RS04615 WP_404301874.1 991783..993000(-) (pilC) [Alicycliphilus denitrificans strain Ylb10]
MATVASRGIKDFVFEWEGKDRSGKIVRGEVRAAGENQVKATLRRQGVLPTRIKKRRMSAGKKIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTKLLNDIRADVETGTSLNAAFRKYPMHFDSLYCNLVEAGEAAGILEALLDRLALYMEKT
EAIKSKIRSALMYPVSVIIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLFVMAISEFFVDYWWLIFGVIGGGFYFFM
QAWKRSEKMQQAMDRFLLKMPIFGALINKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYALATDRIQQEVSTGT
SLTAAMGNANVFPSMVLQMCAIGEESGSIDHMLSKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=837229 P7644_RS04615 WP_404301874.1 991783..993000(-) (pilC) [Alicycliphilus denitrificans strain Ylb10]
ATGGCGACCGTGGCATCGAGGGGCATCAAGGACTTTGTCTTTGAATGGGAGGGCAAGGATCGCAGCGGCAAAATCGTGCG
TGGCGAGGTTCGGGCGGCTGGCGAGAACCAGGTCAAGGCCACGCTGCGCCGCCAGGGTGTCTTGCCGACCAGGATCAAGA
AGCGCCGCATGAGCGCGGGCAAGAAAATCAAACCCAAGGACATCGCCCTGTTCACGCGCCAGATGGCAACCATGATGAAG
GCCGGCGTGCCGTTGCTGCAGGCCTTTGATATCGTGGGGCGGGGCAATACCAACCCCAGCGTGACCAAACTTCTCAACGA
TATTCGCGCCGATGTGGAAACCGGCACCTCGCTGAATGCGGCGTTCCGCAAATACCCCATGCATTTCGACAGCCTGTATT
GCAACCTGGTGGAGGCAGGCGAGGCGGCCGGCATTCTGGAGGCATTACTCGATCGTCTGGCGCTCTATATGGAGAAAACA
GAGGCCATTAAATCCAAGATCCGTTCGGCCTTGATGTATCCCGTTTCTGTGATTATCGTTGCCTTCGTCGTGGTGACCGT
CATCATGATCTTTGTGATTCCCGCATTCAAGGAGGTTTTCACCTCATTCGGCGCCGATTTGCCGGCGCCCACGCTGTTCG
TCATGGCCATCAGCGAGTTTTTTGTGGACTATTGGTGGCTGATCTTCGGCGTGATTGGCGGCGGTTTTTATTTTTTCATG
CAGGCCTGGAAGCGCAGCGAAAAAATGCAGCAGGCGATGGATCGCTTCCTGCTGAAGATGCCCATCTTTGGCGCCCTGAT
CAACAAATCCTGCGTGGCGCGCTGGACACGCACCCTGTCCACCATGTTCGCTGCGGGCGTGCCGCTGGTGGAGGCGCTGG
ACTCGGTCGGTGGCGCTTCCGGCAACTCGGTCTATGCCTTGGCGACCGACAGGATCCAGCAGGAAGTCTCCACCGGCACC
AGCCTGACGGCGGCCATGGGCAATGCCAATGTGTTCCCGTCCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAATCGGG
CTCCATCGACCACATGCTGAGCAAGGCGGCCGACTTCTACGAGGCCGAGGTCGACGAAATGGTGGCCGGCCTGTCCAGCC
TGATGGAGCCCATCATCATTGTGTTCCTGGGCACCCTCATCGGTGGCATCGTGGTCTCGATGTACCTGCCCATCTTCAAG
CTGGGGCAGGTAGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.827

100

0.538
  pilG Neisseria gonorrhoeae MS11

53.03

97.778

0.519
  pilG Neisseria meningitidis 44/76-A

52.778

97.778

0.516
  pilC Acinetobacter baylyi ADP1

50

98.272

0.491
  pilC Legionella pneumophila strain ERS1305867

48.995

98.272

0.481
  pilC Acinetobacter baumannii D1279779

49.118

98.025

0.481
  pilC Vibrio campbellii strain DS40M4

40

98.765

0.395
  pilC Vibrio cholerae strain A1552

39.899

97.778

0.39
  pilC Thermus thermophilus HB27

37.594

98.519

0.37