Detailed information NTG0837228

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P7644_RS04610
• Genome accession: NZ_CP126238
• Coordinates: 990899..991783 (-)
• Length: 294 a.a.
• NCBI ID: WP_404301873.1
• Uniprot ID: -
• Organism: Alicycliphilus denitrificans strain Ylb10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 985899..996783

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7644_RS04580 (P7644_04565)	argJ	986599..987828 (+)	1230	WP_404301868.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
P7644_RS04585 (P7644_04570)	-	987880..988752 (+)	873	WP_404301869.1	ATP-binding protein	-
P7644_RS04590 (P7644_04575)	-	988749..989186 (+)	438	WP_404301870.1	NUDIX domain-containing protein	-
P7644_RS04595 (P7644_04580)	-	989250..989471 (-)	222	WP_404303116.1	DNA gyrase inhibitor YacG	-
P7644_RS04600 (P7644_04585)	zapD	989480..990235 (-)	756	WP_404301871.1	cell division protein ZapD	-
P7644_RS04605 (P7644_04590)	coaE	990263..990898 (-)	636	WP_404301872.1	dephospho-CoA kinase	-
P7644_RS04610 (P7644_04595)	pilD	990899..991783 (-)	885	WP_404301873.1	prepilin peptidase	Machinery gene
P7644_RS04615 (P7644_04600)	pilC	991783..993000 (-)	1218	WP_404301874.1	type II secretion system F family protein	Machinery gene
P7644_RS04620 (P7644_04605)	pilF	993022..994761 (-)	1740	WP_404301876.1	type IV-A pilus assembly ATPase PilB	Machinery gene
P7644_RS04625 (P7644_04610)	-	994907..995131 (-)	225	WP_404301877.1	twin transmembrane helix small protein	-
P7644_RS04630 (P7644_04615)	-	995147..995911 (+)	765	WP_404301878.1	SURF1 family protein	-
P7644_RS04635 (P7644_04620)	-	995853..996551 (+)	699	WP_404301879.1	hypothetical protein	-

Sequence

Protein

• Length: 294 a.a.
• Molecular weight: 31590.22 Da
• Isoelectric Point: 7.5437

>NTDB_id=837228 P7644_RS04610 WP_404301873.1 990899..991783(-) (pilD) [Alicycliphilus denitrificans strain Ylb10]
MTGSMLADAALVGVLGLLIGSFLNVVIHRLPGMMERQWAAECAQYAQDTGLLKPGKQDTPAPETFNLWTPRSRCPACGHE
VRWYENIPVLSYLGLRGRCSGCGTRISARYPLVELATAALFYACAMRWGWSLATLAWCGFSAALVALALIDWDTTLLPDD
ITLPLLWAGLLAAVLHWTEVPPVDAVLGAAAGYLSLWTVYWGFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIILMAS
VIGAIVGIGMKFASNLREGKYVPFGPFLAGGGLAAMLWGPGRIMQAIYATLGLL

Nucleotide

• Length: 885 bp

>NTDB_id=837228 P7644_RS04610 WP_404301873.1 990899..991783(-) (pilD) [Alicycliphilus denitrificans strain Ylb10]
ATGACGGGGTCGATGCTTGCCGACGCCGCGCTGGTTGGCGTCCTGGGATTGCTGATTGGCAGCTTTTTGAACGTGGTGAT
CCATCGCCTGCCGGGCATGATGGAGCGGCAATGGGCGGCCGAATGCGCGCAATACGCGCAAGACACGGGCCTGTTGAAGC
CGGGCAAGCAGGACACGCCAGCACCTGAGACGTTCAATCTGTGGACCCCGCGCTCGCGTTGCCCCGCCTGCGGGCATGAG
GTGCGCTGGTATGAAAATATTCCCGTGCTCAGCTACCTGGGGCTGCGTGGCCGCTGCTCGGGCTGCGGCACGCGCATCAG
TGCACGCTACCCGCTGGTCGAGCTGGCCACGGCAGCCCTGTTTTATGCCTGCGCCATGCGCTGGGGCTGGTCCCTGGCGA
CGCTGGCCTGGTGCGGTTTTTCTGCCGCCCTGGTGGCCCTCGCCCTCATCGACTGGGACACCACGCTGCTACCCGACGAC
ATCACCCTGCCCCTGCTGTGGGCCGGCTTGCTGGCCGCCGTATTGCACTGGACGGAGGTGCCGCCGGTGGACGCGGTGCT
CGGCGCAGCCGCGGGCTATCTGTCGCTATGGACCGTGTACTGGGGCTTCAAGCTCGCCACGGGCAAGGAGGGCATGGGCT
ATGGCGACTTCAAGCTGTTTGCCGCCCTGGGCGCCTGGTTTGGCTGGCAGGCCCTGGTGCCCATCATCCTCATGGCCTCG
GTGATAGGCGCCATCGTGGGCATTGGCATGAAGTTCGCCAGCAACCTGCGCGAGGGCAAATACGTGCCTTTCGGCCCGTT
TCTGGCGGGCGGCGGCCTGGCGGCCATGCTGTGGGGGCCGGGGCGCATCATGCAGGCCATCTATGCCACCCTGGGGCTGC
TGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-127)

• Type IV leader peptidase family (Peptidase_A24) (141-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.896	94.898	0.483
pilD	Vibrio campbellii strain DS40M4	49.624	90.476	0.449
pilD	Neisseria gonorrhoeae MS11	49.237	89.116	0.439
pilD	Acinetobacter baumannii D1279779	45.62	93.197	0.425
pilD	Acinetobacter nosocomialis M2	45.255	93.197	0.422