Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QN242_RS05545 Genome accession   NZ_CP126173
Coordinates   1326091..1327350 (-) Length   419 a.a.
NCBI ID   WP_184447443.1    Uniprot ID   -
Organism   Xanthomonas rydalmerensis strain DAR34882     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1321091..1332350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN242_RS05525 (QN242_05530) - 1322361..1323038 (+) 678 WP_010340533.1 response regulator transcription factor -
  QN242_RS05530 (QN242_05535) - 1323031..1324365 (+) 1335 WP_184645461.1 HAMP domain-containing sensor histidine kinase -
  QN242_RS05535 (QN242_05540) coaE 1324584..1325207 (-) 624 WP_317844762.1 dephospho-CoA kinase -
  QN242_RS05540 (QN242_05545) - 1325221..1326084 (-) 864 WP_317844763.1 A24 family peptidase -
  QN242_RS05545 (QN242_05550) pilC 1326091..1327350 (-) 1260 WP_184447443.1 type II secretion system F family protein Machinery gene
  QN242_RS05550 (QN242_05555) - 1327711..1328118 (+) 408 WP_184447007.1 pilin -
  QN242_RS05555 (QN242_05560) pilB 1328314..1330044 (+) 1731 WP_317844764.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QN242_RS05560 (QN242_05565) pilR 1330275..1331663 (-) 1389 WP_160967705.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45709.08 Da        Isoelectric Point: 10.1706

>NTDB_id=837086 QN242_RS05545 WP_184447443.1 1326091..1327350(-) (pilC) [Xanthomonas rydalmerensis strain DAR34882]
MSATRSAVKKEPVARSTSQQVPFVWEGTDKRGVKMKGEQIAKSANLLRAELRRQGITPSVVKPKPKPLFGASGSKIGTKD
IAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVDQIRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVMAVALIVSSILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWL
VLFILVGTIGGFMFAYKRSPAMQHGMDRLILKVPIIGQIMHNSSVARFSRTLAVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVAVGYPVNMAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=837086 QN242_RS05545 WP_184447443.1 1326091..1327350(-) (pilC) [Xanthomonas rydalmerensis strain DAR34882]
ATGTCCGCAACGCGCAGCGCAGTCAAGAAAGAGCCGGTCGCACGCAGCACCAGTCAGCAGGTGCCCTTTGTCTGGGAAGG
CACCGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGATCGCCAAAAGCGCCAACTTGCTGCGCGCCGAACTCCGCCGGC
AGGGCATCACGCCTTCGGTAGTCAAGCCCAAGCCCAAGCCGCTGTTCGGGGCGAGCGGCAGCAAGATCGGCACAAAGGAC
ATCGCCTTCTTCAGCCGCCAAATGGCGACGATGATGAAATCCGGCGTCCCCATCGTGGGTTCGCTGGAAATCATTGCCAG
CGGGCATAAGAACCCGCGCATGAAGAAGATGGTGGACCAGATCCGCACCGACATCGAGGGTGGCTCGTCGCTGTATGAAG
CGATCAGCAAGCATCCGGTGCAGTTCGACGAGCTCTACCGCAATCTGGTCAAGGCCGGCGAAGGTGCCGGCGTGCTCGAG
ACGGTGTTGGAGACGGTCGCGACCTATAAAGAGAACATCGAGGCGTTGAAGGGCAAGATCAAGAAGGCCTTGTTCTACCC
GGCCATGGTGATGGCGGTCGCCTTGATCGTCAGCTCGATCCTGCTTGTCTTCGTGGTTCCGCAGTTCGAAGACGTGTTCA
AGGGTTTTGGCGCGGAACTGCCGGCCTTCACCCAGATGATCGTGGCCGCCTCGCGCTTCATGGTGGCTTACTGGTGGTTG
GTGCTCTTCATCCTGGTCGGCACCATCGGCGGCTTCATGTTTGCCTACAAGCGGTCGCCGGCCATGCAACATGGCATGGA
CCGCTTGATTCTGAAGGTACCGATCATCGGCCAAATCATGCACAACAGCTCCGTGGCCCGCTTCTCCCGGACACTGGCGG
TTACCTTTCGCGCAGGCGTACCGTTGGTGGAGGCGCTGGATATCGTCGCCGGCGCCACCGGCAACAGCGTGTACGAAAAA
GCCGTGCTGCGCATGCGCGACGATGTGGCGGTCGGTTATCCGGTCAATATGGCGATGAAACAGACCAATCTGTTCCCGCA
CATGGTGATCCAGATGACCGCGATCGGCGAGGAGGCAGGCGCGCTGGACGCGATGTTGTTCAAGGTGGCCGAGTATTTCG
AGCAGGAAGTGAACAACGCGGTCGATGCACTGAGCAGCCTGCTGGAACCGTTGATCATGGTGTTCATCGGCACCATCGTC
GGTGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.04

94.511

0.511
  pilC Legionella pneumophila strain ERS1305867

53.283

94.511

0.504
  pilC Acinetobacter baumannii D1279779

51.471

97.375

0.501
  pilC Acinetobacter baylyi ADP1

50.245

97.375

0.489
  pilG Neisseria gonorrhoeae MS11

43.97

94.988

0.418
  pilC Vibrio cholerae strain A1552

42.963

96.659

0.415
  pilG Neisseria meningitidis 44/76-A

43.467

94.988

0.413
  pilC Vibrio campbellii strain DS40M4

40.302

94.749

0.382
  pilC Thermus thermophilus HB27

38.519

96.659

0.372