Detailed information NTG0837088

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QN242_RS05560
• Genome accession: NZ_CP126173
• Coordinates: 1330275..1331663 (-)
• Length: 462 a.a.
• NCBI ID: WP_160967705.1
• Uniprot ID: -
• Organism: Xanthomonas rydalmerensis strain DAR34882
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1325275..1336663

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QN242_RS05545 (QN242_05550)	pilC	1326091..1327350 (-)	1260	WP_184447443.1	type II secretion system F family protein	Machinery gene
QN242_RS05550 (QN242_05555)	-	1327711..1328118 (+)	408	WP_184447007.1	pilin	-
QN242_RS05555 (QN242_05560)	pilB	1328314..1330044 (+)	1731	WP_317844764.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QN242_RS05560 (QN242_05565)	pilR	1330275..1331663 (-)	1389	WP_160967705.1	sigma-54 dependent transcriptional regulator	Regulator
QN242_RS05565 (QN242_05570)	-	1331739..1333358 (-)	1620	WP_317844765.1	ATP-binding protein	-
QN242_RS05570 (QN242_05575)	sucC	1333760..1334929 (+)	1170	WP_160967709.1	ADP-forming succinate--CoA ligase subunit beta	-
QN242_RS05575 (QN242_05580)	sucD	1334952..1335827 (+)	876	WP_184447004.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49885.30 Da
• Isoelectric Point: 6.7311

>NTDB_id=837088 QN242_RS05560 WP_160967705.1 1330275..1331663(-) (pilR) [Xanthomonas rydalmerensis strain DAR34882]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAKHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIHVLRGLVKHALELNNESRAAPPQPAPEQASRLLGASAAMDALRSTIAKVAR
NQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGAATEVPVDVRILSATHKDLADLVAEGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKSHGRPTPLLSPSALDALSSYAFPGNVRELENILERALAMAEDDQISAADLRLPQPGNHARSAAEAAPA
LPRGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=837088 QN242_RS05560 WP_160967705.1 1330275..1331663(-) (pilR) [Xanthomonas rydalmerensis strain DAR34882]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAGCGCGACATCCGCGAGTTGCTGGTCCTGACCCTGGGCCGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCGCGCGAACTGCTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAAATCGCCAAGCACTACCCGCGCACGCCGGTGGCA
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCACTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCCACGTGCTGCGTGGCCTGGTCAAGCATGCGCTGGAACTCAACAACGAAAGCCGCGCCGCGCCGCCGCAGCCGG
CCCCGGAACAGGCCAGCCGCCTGCTCGGCGCGTCGGCGGCGATGGACGCGCTGCGCAGCACCATCGCCAAGGTCGCGCGC
AACCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAGGGCGC
CCGCGCGGCCGGCCCCTTCGTGCCGGTGAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCACGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTCGAC
GAGGTCGCCGAACTGCCGCTGCCGATGCAGGTCAAGTTGCTGCGCGCGATCCAGGAGAAATCGGTGCGTCCGGTCGGCGC
CGCCACCGAAGTGCCGGTCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGAGGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCGCGGCTGGCCAAGAGCCACGGCCGCCCCACCCCGCTGCTGTCGCCCTCCGCGCTGGA
TGCCCTGAGCAGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAACGCGCCCTGGCGATGGCCGAGG
ACGACCAGATCAGCGCCGCCGACCTGCGCCTGCCGCAGCCCGGCAACCATGCCCGCAGCGCCGCCGAGGCTGCACCGGCG
CTGCCGCGCGGCGTGGTCGACATCGACCCGACCTCCTCCGCGCTGCCGTCCTACATCGAACAGCTCGAACGCGCCGCCAT
TCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTTCGCGCGTTGCGCT
ACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

• Response regulator receiver domain (Response_reg) (8-114)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.826	99.567	0.626
pilR	Acinetobacter baumannii strain A118	46.868	100	0.47