Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JLC71_RS00190 Genome accession   NZ_AP024094
Coordinates   19162..20385 (-) Length   407 a.a.
NCBI ID   WP_200916684.1    Uniprot ID   A0A7I8EC63
Organism   Jeongeupia sp. HS-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 14162..25385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLC71_RS00160 (JHS3_00300) - 14927..15853 (-) 927 WP_200916678.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  JLC71_RS00165 (JHS3_00310) - 15816..16568 (-) 753 WP_200916679.1 GNAT family N-acetyltransferase -
  JLC71_RS00170 - 16658..16843 (-) 186 WP_200916680.1 DNA gyrase inhibitor YacG -
  JLC71_RS00175 (JHS3_00320) zapD 16840..17598 (-) 759 WP_200916681.1 cell division protein ZapD -
  JLC71_RS00180 (JHS3_00330) coaE 17667..18281 (-) 615 WP_200916682.1 dephospho-CoA kinase -
  JLC71_RS00185 (JHS3_00340) pilD 18284..19162 (-) 879 WP_200916683.1 A24 family peptidase Machinery gene
  JLC71_RS00190 (JHS3_00350) pilC 19162..20385 (-) 1224 WP_200916684.1 type II secretion system F family protein Machinery gene
  JLC71_RS00195 (JHS3_00360) pilB 20410..22116 (-) 1707 WP_200916685.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JLC71_RS00200 (JHS3_00370) - 22232..23488 (-) 1257 WP_200916686.1 HlyC/CorC family transporter -
  JLC71_RS00205 (JHS3_00380) - 23542..24189 (-) 648 WP_200916687.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44363.43 Da        Isoelectric Point: 10.0482

>NTDB_id=83448 JLC71_RS00190 WP_200916684.1 19162..20385(-) (pilC) [Jeongeupia sp. HS-3]
MGVQAKAAAVKEMTFAWEGKDRSGKMIKGEMRAAGEAILKNHLRRQGINVTRIKKQRLKGGRRITDQDITMFTRQLATML
KSGVPLLTSFDIVAKGHSNASVTKLLLDIKNDIETGSSLTQAFRKHPAQFDALYCNLIQAGEQAGILDSLLARLATYKEK
ILGVKKKIKAAMFYPTAVIVAAFVITAVIMIFVIPAFKDLFSSFGADLPGPTLMVIALSDIFVSYWWLIFGGIFGGIWFF
MKTWRRSVAMQIFMDRLLLKLPIFGEIVKNATIARWSRTLATMFAAGVPLVESLDSVGGAAGNHVYKIATAKIQAEVSTG
TSLTLSMQNANVFPNMVLQMASIGEESGALDAMLGKIADYYEEEVDNAVEALSSLMEPIIMVVLGTLIGGLVVAMYLPIF
KMGEAVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=83448 JLC71_RS00190 WP_200916684.1 19162..20385(-) (pilC) [Jeongeupia sp. HS-3]
ATGGGCGTTCAGGCAAAAGCCGCAGCGGTCAAGGAAATGACCTTCGCCTGGGAAGGCAAGGATCGCAGTGGCAAGATGAT
CAAGGGCGAGATGCGCGCGGCCGGTGAGGCGATTCTGAAAAATCACCTGCGCCGCCAGGGTATCAACGTCACCCGCATCA
AGAAACAGCGCCTCAAGGGTGGCCGGCGCATTACCGACCAAGACATCACCATGTTCACCCGGCAGCTGGCCACGATGCTC
AAATCGGGCGTGCCCTTACTGACCTCGTTCGACATCGTTGCCAAGGGACACTCGAATGCCTCGGTCACCAAGCTGCTGCT
GGACATCAAGAACGACATCGAAACGGGTTCGTCGCTGACACAAGCATTCCGCAAGCACCCGGCGCAGTTCGATGCTCTGT
ACTGCAACCTGATTCAGGCGGGCGAGCAAGCCGGTATTCTCGACAGCCTGCTGGCGCGTCTGGCGACGTACAAGGAAAAA
ATCCTTGGCGTCAAAAAGAAGATCAAAGCCGCGATGTTCTACCCGACAGCGGTCATCGTCGCCGCCTTTGTCATCACCGC
CGTAATCATGATTTTCGTCATCCCGGCATTCAAGGACTTGTTCTCAAGCTTCGGTGCCGACCTGCCCGGTCCGACACTGA
TGGTTATTGCGCTCTCGGATATATTCGTCAGCTATTGGTGGCTGATCTTTGGCGGTATTTTCGGCGGGATATGGTTCTTC
ATGAAAACATGGCGACGATCGGTGGCCATGCAGATTTTCATGGACAGACTGCTGCTGAAACTGCCGATTTTTGGTGAAAT
CGTCAAAAACGCCACCATTGCCCGCTGGTCGCGCACGCTGGCGACGATGTTCGCCGCCGGCGTGCCTTTGGTCGAATCGC
TGGACTCGGTCGGTGGTGCGGCAGGCAATCATGTTTACAAGATCGCCACGGCCAAGATCCAGGCCGAGGTCAGCACCGGC
ACCAGCTTGACGCTATCGATGCAAAACGCCAATGTCTTCCCGAACATGGTGCTGCAAATGGCCTCGATTGGTGAGGAGTC
CGGCGCACTCGACGCGATGCTCGGCAAGATTGCCGACTACTACGAGGAAGAGGTCGACAACGCGGTGGAAGCACTATCAA
GCCTGATGGAGCCCATCATCATGGTGGTGCTCGGCACGCTGATCGGTGGCCTGGTCGTCGCGATGTACCTGCCCATTTTC
AAGATGGGCGAGGCCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7I8EC63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.261

97.789

0.511
  pilC Acinetobacter baumannii D1279779

51.759

97.789

0.506
  pilG Neisseria gonorrhoeae MS11

51.128

98.034

0.501
  pilG Neisseria meningitidis 44/76-A

50.627

98.034

0.496
  pilC Pseudomonas stutzeri DSM 10701

50.374

98.526

0.496
  pilC Acinetobacter baylyi ADP1

50.63

97.543

0.494
  pilC Vibrio campbellii strain DS40M4

38.575

100

0.386
  pilC Vibrio cholerae strain A1552

39.348

98.034

0.386

Multiple sequence alignment