Detailed information NTG0083447

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JLC71_RS00185
• Genome accession: NZ_AP024094
• Coordinates: 18284..19162 (-)
• Length: 292 a.a.
• NCBI ID: WP_200916683.1
• Uniprot ID: A0A7I8E8R9
• Organism: Jeongeupia sp. HS-3
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 13284..24162

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JLC71_RS00150 (JHS3_00280)	rplQ	13564..13953 (+)	390	WP_200916676.1	50S ribosomal protein L17	-
JLC71_RS00155 (JHS3_00290)	-	14106..14930 (+)	825	WP_200916677.1	symmetrical bis(5'-nucleosyl)-tetraphosphatase	-
JLC71_RS00160 (JHS3_00300)	-	14927..15853 (-)	927	WP_200916678.1	1-acyl-sn-glycerol-3-phosphate acyltransferase	-
JLC71_RS00165 (JHS3_00310)	-	15816..16568 (-)	753	WP_200916679.1	GNAT family N-acetyltransferase	-
JLC71_RS00170	-	16658..16843 (-)	186	WP_200916680.1	DNA gyrase inhibitor YacG	-
JLC71_RS00175 (JHS3_00320)	zapD	16840..17598 (-)	759	WP_200916681.1	cell division protein ZapD	-
JLC71_RS00180 (JHS3_00330)	coaE	17667..18281 (-)	615	WP_200916682.1	dephospho-CoA kinase	-
JLC71_RS00185 (JHS3_00340)	pilD	18284..19162 (-)	879	WP_200916683.1	A24 family peptidase	Machinery gene
JLC71_RS00190 (JHS3_00350)	pilC	19162..20385 (-)	1224	WP_200916684.1	type II secretion system F family protein	Machinery gene
JLC71_RS00195 (JHS3_00360)	pilB	20410..22116 (-)	1707	WP_200916685.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JLC71_RS00200 (JHS3_00370)	-	22232..23488 (-)	1257	WP_200916686.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 31284.25 Da
• Isoelectric Point: 7.9880

>NTDB_id=83447 JLC71_RS00185 WP_200916683.1 18284..19162(-) (pilD) [Jeongeupia sp. HS-3]
MTSDFLVLLQQSPPVFGGFLFVLGLLVGSFLNVVIHRLPKMIEADFRHECSCIDLPLDAPQPPRPHYNLMTPRSRCPHCE
HPIGALENIPVISWLVLRGRCRACAAPISPRYPLIELATATLTTWVGLHFGLGASGIAGIALTWALIALIAIDADTYLLP
DSITLPLLWLGLGINLNATFVPLSHAVVGAMAGYLVLWSIFWLFKLITGKEGMGYGDFKLLAALGAWFGWAALPVIILLS
SVAGAVIGIGQVIAAKRGWGKPIPFGPYLGIAGWLTLMWGATLGSALFNGLG

Nucleotide

• Length: 879 bp

>NTDB_id=83447 JLC71_RS00185 WP_200916683.1 18284..19162(-) (pilD) [Jeongeupia sp. HS-3]
ATGACGAGCGATTTTCTCGTGCTATTGCAGCAGAGCCCGCCAGTGTTCGGCGGGTTTTTGTTCGTGCTCGGCTTGCTCGT
TGGTAGTTTCCTCAATGTGGTGATTCACCGGCTACCGAAAATGATCGAAGCCGATTTCCGCCACGAATGCAGCTGCATCG
ACTTACCGCTGGATGCCCCCCAACCGCCGCGGCCGCACTACAACTTGATGACACCGCGCTCGCGCTGCCCACACTGCGAG
CATCCGATCGGCGCGCTGGAGAACATCCCGGTGATCAGCTGGCTGGTTCTGCGCGGCCGCTGTCGCGCCTGCGCTGCGCC
AATCAGCCCACGCTATCCACTGATTGAGCTGGCTACCGCAACTCTCACGACCTGGGTCGGCCTGCATTTCGGCCTCGGTG
CGAGCGGCATCGCCGGCATCGCGCTGACTTGGGCACTGATCGCACTGATCGCCATTGATGCGGATACCTATCTGCTGCCG
GACAGCATTACCCTACCCCTGCTTTGGCTGGGATTGGGGATCAACCTCAACGCCACCTTTGTTCCGCTTTCGCACGCCGT
CGTCGGCGCAATGGCCGGCTATCTCGTGCTCTGGAGCATCTTTTGGTTGTTCAAGCTCATCACCGGCAAGGAAGGTATGG
GCTATGGTGACTTCAAACTGCTCGCAGCATTGGGGGCCTGGTTTGGCTGGGCGGCACTACCGGTCATCATCCTGCTATCG
TCCGTAGCCGGCGCGGTAATCGGCATCGGCCAGGTCATAGCCGCCAAGCGCGGCTGGGGCAAGCCGATTCCATTTGGTCC
TTACCTTGGCATCGCCGGCTGGCTCACCCTGATGTGGGGTGCAACACTCGGCTCGGCACTGTTCAACGGATTGGGATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (141-249)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-130)

3D structure

• AlphaFold DB: A0A7I8E8R9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	52.281	97.603	0.51
pilD	Vibrio cholerae strain A1552	57.308	89.041	0.51
pilD	Acinetobacter baumannii D1279779	50.923	92.808	0.473
pilD	Acinetobacter nosocomialis M2	50.185	92.808	0.466
pilD	Neisseria gonorrhoeae MS11	51.373	87.329	0.449