Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QM226_RS10780 Genome accession   NZ_CP125992
Coordinates   2089690..2089995 (+) Length   101 a.a.
NCBI ID   WP_283729770.1    Uniprot ID   -
Organism   Bacillus cereus strain FFI_gr_36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2084690..2094995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM226_RS10750 (QM226_002154) - 2084909..2085187 (+) 279 WP_283729765.1 DUF6262 family protein -
  QM226_RS10755 (QM226_002155) - 2085381..2086172 (-) 792 WP_283729766.1 sulfotransferase family 2 domain-containing protein -
  QM226_RS10760 (QM226_002156) - 2086214..2086987 (-) 774 WP_283729767.1 sulfite exporter TauE/SafE family protein -
  QM226_RS10765 (QM226_002157) - 2087075..2087863 (-) 789 WP_283729768.1 sulfotransferase family 2 domain-containing protein -
  QM226_RS10770 (QM226_002158) - 2088224..2088748 (+) 525 WP_283729769.1 DUF421 domain-containing protein -
  QM226_RS10775 (QM226_002159) - 2089356..2089475 (+) 120 Protein_2043 DUF421 domain-containing protein -
  QM226_RS10780 (QM226_002160) ssbA 2089690..2089995 (+) 306 WP_283729770.1 single-stranded DNA-binding protein Machinery gene
  QM226_RS10785 (QM226_002161) - 2090423..2091061 (+) 639 WP_283729771.1 TetR/AcrR family transcriptional regulator -
  QM226_RS10790 (QM226_002162) - 2091169..2091954 (+) 786 WP_283729772.1 SDR family oxidoreductase -
  QM226_RS10795 (QM226_002163) - 2092243..2093676 (+) 1434 Protein_2047 IS4 family transposase -
  QM226_RS10800 (QM226_002164) - 2094294..2094815 (-) 522 WP_283729773.1 hypothetical protein -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11605.12 Da        Isoelectric Point: 8.6755

>NTDB_id=834205 QM226_RS10780 WP_283729770.1 2089690..2089995(+) (ssbA) [Bacillus cereus strain FFI_gr_36]
MTKEPELYYTKQGAAYARICIAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTSNYDDEQGKRI
YRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 306 bp        

>NTDB_id=834205 QM226_RS10780 WP_283729770.1 2089690..2089995(+) (ssbA) [Bacillus cereus strain FFI_gr_36]
TTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGCCGCTTATGCAAGAATATGTATTGCGGTGAATAGAGGATT
TCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTTGGCGAAAATCGGCTGAGAATGTAACTGAAT
ATTGTAAGAAGGGGTCACTTGTTGGGATTACAGGGCGTATTCAGACGAGTAATTACGATGATGAACAAGGCAAGAGAATA
TATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCGGGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.25

95.05

0.535
  ssbB Bacillus subtilis subsp. subtilis str. 168

50

100

0.505
  ssb Latilactobacillus sakei subsp. sakei 23K

53.125

95.05

0.505
  ssbB Lactococcus lactis subsp. cremoris KW2

42.708

95.05

0.406
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40

99.01

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

38

99.01

0.376
  ssbB/cilA Streptococcus pneumoniae Rx1

37

99.01

0.366
  ssbB/cilA Streptococcus pneumoniae D39

37

99.01

0.366
  ssbB/cilA Streptococcus pneumoniae R6

37

99.01

0.366
  ssbB/cilA Streptococcus pneumoniae TIGR4

37

99.01

0.366