Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QMY54_RS26465 Genome accession   NZ_CP125986
Coordinates   5144106..5145314 (+) Length   402 a.a.
NCBI ID   WP_034095834.1    Uniprot ID   A0A2G0WSG4
Organism   Pseudomonas rhodesiae strain 3.8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5139106..5150314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY54_RS26440 (QMY54_05273) nadC 5140560..5141408 (+) 849 WP_034095838.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QMY54_RS26445 (QMY54_05274) - 5141477..5141782 (-) 306 WP_034095837.1 DUF6388 family protein -
  QMY54_RS26455 (QMY54_05276) - 5142053..5143453 (-) 1401 WP_034095836.1 O-antigen ligase family protein -
  QMY54_RS26460 (QMY54_05277) - 5143489..5143902 (-) 414 WP_034095835.1 pilin -
  QMY54_RS26465 (QMY54_05278) pilC 5144106..5145314 (+) 1209 WP_034095834.1 type II secretion system F family protein Machinery gene
  QMY54_RS26470 (QMY54_05279) pilD 5145311..5146177 (+) 867 WP_034095833.1 A24 family peptidase Machinery gene
  QMY54_RS26475 (QMY54_05280) coaE 5146174..5146800 (+) 627 WP_034095832.1 dephospho-CoA kinase -
  QMY54_RS26480 (QMY54_05281) yacG 5146797..5146997 (+) 201 WP_034095831.1 DNA gyrase inhibitor YacG -
  QMY54_RS26485 (QMY54_05282) - 5146994..5147209 (-) 216 WP_003171680.1 hypothetical protein -
  QMY54_RS26490 (QMY54_05283) - 5147275..5147964 (-) 690 WP_034095830.1 energy-coupling factor ABC transporter permease -
  QMY54_RS26495 (QMY54_05284) - 5147961..5148428 (-) 468 WP_034095829.1 hypothetical protein -
  QMY54_RS26500 (QMY54_05285) - 5148531..5149160 (+) 630 WP_034095828.1 DUF1780 domain-containing protein -
  QMY54_RS26505 (QMY54_05286) - 5149214..5149387 (+) 174 WP_034095827.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43194.71 Da        Isoelectric Point: 10.2726

>NTDB_id=834125 QMY54_RS26465 WP_034095834.1 5144106..5145314(+) (pilC) [Pseudomonas rhodesiae strain 3.8]
MNNAVTLYTWEGINRKGRKVSGQSTGRSPAVVKAQLRQQGIRPGRVRKSIPRLPGLAAPIKAADITLFTRQLATLLKAGI
PLLQAFDLISEGVEKPPVGELLQSLRQQVAAGTTLTEALRSQPRYFDELYCHLVAAGEQAGALETLLERLAVHREKSEQL
KARIKKAMTYPIAVVIVAGLVTGVLLVHVVPQFQSLFAGVNGKLPGFTLAVIALSEFMQHAWWIVALGLGVGVIGLRQAC
RKSPIFRHWLDAGLLKAPLAGKLLQKSAVARYARTLSTTFAAGVPLVQALDSVAGAAGSAPYKQAIEHMRRDVSTGMPLN
HAMATSGLFPGMAIQMTAIGEESGTLDFMLEKVASHYETEVDNQVDHLTSLMEPLIMVVLGGIVGSLVIAMYLPIFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=834125 QMY54_RS26465 WP_034095834.1 5144106..5145314(+) (pilC) [Pseudomonas rhodesiae strain 3.8]
ATGAACAACGCTGTAACGCTTTACACCTGGGAAGGCATCAACCGCAAAGGCCGCAAGGTGTCCGGCCAAAGCACCGGACG
CAGCCCTGCCGTGGTCAAGGCGCAACTGCGCCAACAAGGCATCCGCCCCGGCCGTGTGCGCAAGTCAATTCCACGGCTGC
CAGGCCTTGCCGCGCCGATCAAAGCCGCCGACATAACCTTGTTCACCCGCCAGTTGGCCACGTTGCTGAAGGCCGGCATT
CCCCTGCTGCAAGCCTTCGATCTGATCAGCGAAGGTGTCGAGAAGCCGCCTGTGGGTGAACTGCTGCAAAGCCTGAGACA
ACAGGTCGCCGCCGGCACCACCCTGACTGAAGCGTTACGCAGTCAACCGCGTTATTTCGATGAGCTGTACTGCCATTTGG
TAGCGGCCGGCGAACAGGCCGGCGCGCTTGAGACGCTGCTGGAGCGCCTGGCGGTTCATCGCGAAAAGAGCGAACAGCTC
AAAGCCAGGATCAAAAAAGCCATGACCTACCCCATCGCGGTCGTGATCGTGGCCGGGCTTGTCACTGGCGTGCTGCTGGT
GCATGTGGTGCCGCAGTTCCAGAGCCTGTTCGCCGGAGTGAACGGTAAGCTGCCGGGCTTCACCCTCGCAGTTATCGCTC
TGTCGGAGTTCATGCAACATGCCTGGTGGATCGTCGCGCTGGGGCTTGGTGTGGGGGTTATTGGCCTGCGTCAGGCCTGT
CGAAAATCGCCAATCTTTCGCCATTGGCTGGACGCCGGTTTGTTGAAAGCACCGCTGGCAGGCAAACTGCTGCAAAAATC
AGCCGTGGCCCGCTACGCCCGTACGCTTTCTACCACCTTCGCGGCCGGGGTGCCGCTGGTGCAGGCCCTGGATTCAGTGG
CAGGCGCCGCGGGCTCCGCCCCCTACAAACAGGCAATCGAGCATATGCGTCGCGATGTATCCACAGGTATGCCGTTGAAT
CACGCCATGGCCACCAGTGGTCTGTTTCCAGGGATGGCGATTCAGATGACGGCAATCGGCGAAGAATCCGGCACGCTGGA
CTTCATGCTGGAAAAAGTCGCCAGCCACTACGAAACCGAAGTGGATAACCAGGTCGATCACCTCACCAGCCTGATGGAGC
CGCTGATCATGGTCGTGCTGGGAGGCATCGTCGGGTCGTTGGTCATTGCCATGTACTTACCCATCTTCCAACTGGGGAGC
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G0WSG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.228

98.259

0.572
  pilC Acinetobacter baylyi ADP1

51.01

98.507

0.502
  pilC Acinetobacter baumannii D1279779

50.886

98.259

0.5
  pilC Legionella pneumophila strain ERS1305867

50.38

98.259

0.495
  pilC Vibrio cholerae strain A1552

43.291

98.259

0.425
  pilC Vibrio campbellii strain DS40M4

42.64

98.01

0.418
  pilG Neisseria gonorrhoeae MS11

41.562

98.756

0.41
  pilG Neisseria meningitidis 44/76-A

40.806

98.756

0.403
  pilC Thermus thermophilus HB27

36.591

99.254

0.363