Detailed information NTG0834126

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QMY54_RS26470
• Genome accession: NZ_CP125986
• Coordinates: 5145311..5146177 (+)
• Length: 288 a.a.
• NCBI ID: WP_034095833.1
• Uniprot ID: -
• Organism: Pseudomonas rhodesiae strain 3.8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5140311..5151177

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMY54_RS26440 (QMY54_05273)	nadC	5140560..5141408 (+)	849	WP_034095838.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QMY54_RS26445 (QMY54_05274)	-	5141477..5141782 (-)	306	WP_034095837.1	DUF6388 family protein	-
QMY54_RS26455 (QMY54_05276)	-	5142053..5143453 (-)	1401	WP_034095836.1	O-antigen ligase family protein	-
QMY54_RS26460 (QMY54_05277)	-	5143489..5143902 (-)	414	WP_034095835.1	pilin	-
QMY54_RS26465 (QMY54_05278)	pilC	5144106..5145314 (+)	1209	WP_034095834.1	type II secretion system F family protein	Machinery gene
QMY54_RS26470 (QMY54_05279)	pilD	5145311..5146177 (+)	867	WP_034095833.1	A24 family peptidase	Machinery gene
QMY54_RS26475 (QMY54_05280)	coaE	5146174..5146800 (+)	627	WP_034095832.1	dephospho-CoA kinase	-
QMY54_RS26480 (QMY54_05281)	yacG	5146797..5146997 (+)	201	WP_034095831.1	DNA gyrase inhibitor YacG	-
QMY54_RS26485 (QMY54_05282)	-	5146994..5147209 (-)	216	WP_003171680.1	hypothetical protein	-
QMY54_RS26490 (QMY54_05283)	-	5147275..5147964 (-)	690	WP_034095830.1	energy-coupling factor ABC transporter permease	-
QMY54_RS26495 (QMY54_05284)	-	5147961..5148428 (-)	468	WP_034095829.1	hypothetical protein	-
QMY54_RS26500 (QMY54_05285)	-	5148531..5149160 (+)	630	WP_034095828.1	DUF1780 domain-containing protein	-
QMY54_RS26505 (QMY54_05286)	-	5149214..5149387 (+)	174	WP_034095827.1	DUF3094 family protein	-
QMY54_RS26510 (QMY54_05287)	-	5149448..5150746 (+)	1299	WP_284184922.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31668.94 Da
• Isoelectric Point: 8.2403

>NTDB_id=834126 QMY54_RS26470 WP_034095833.1 5145311..5146177(+) (pilD) [Pseudomonas rhodesiae strain 3.8]
MILLLNESPWAFVALASVLGLIVGSFLNVLVWRLPKMLAREWRAQAHEVLGLPAEPVGPTYNLMRPNSCCPQCDHGIRPW
ENIPLLSYLVLKGRCAHCKARISLRYPFTELACGLLSAIVAWHFGVGWQAGAVLLLTWGLLAMSLIDADHQLLPDVLVLP
LMWLGLIVNSFALLVPLPDAVWGAVAGYMSLWSVFWLFKLVTGKDGMGYGDFKLLALLGAWGGWQIVPMTLLMASLVGVF
AGLILMRVRKAQVSTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFQ

Nucleotide

• Length: 867 bp

>NTDB_id=834126 QMY54_RS26470 WP_034095833.1 5145311..5146177(+) (pilD) [Pseudomonas rhodesiae strain 3.8]
TTGATCCTACTGCTGAATGAATCCCCATGGGCCTTTGTCGCCCTGGCTTCGGTGCTGGGGCTGATCGTGGGCAGTTTCCT
CAATGTGCTGGTGTGGCGCCTGCCGAAGATGCTTGCACGGGAGTGGCGTGCCCAGGCCCATGAAGTACTTGGCTTACCGG
CCGAACCCGTCGGGCCGACCTACAACCTGATGCGCCCAAATTCCTGCTGCCCTCAGTGCGATCATGGGATCCGCCCCTGG
GAAAATATTCCGCTGCTCAGCTATCTGGTCCTCAAGGGCCGCTGCGCTCACTGCAAGGCAAGGATCAGCCTGCGCTACCC
ATTCACCGAACTTGCCTGCGGATTGTTGTCGGCGATCGTGGCCTGGCACTTCGGCGTTGGTTGGCAAGCCGGGGCAGTAT
TGCTGCTGACTTGGGGCTTGCTGGCGATGAGCCTGATCGACGCCGACCACCAGTTACTGCCGGATGTGCTGGTACTGCCG
CTTATGTGGCTGGGTCTGATCGTCAACAGCTTTGCACTGCTGGTGCCGTTGCCCGACGCCGTATGGGGAGCGGTGGCCGG
ATACATGAGCCTATGGTCGGTGTTCTGGCTGTTCAAGTTGGTCACTGGCAAGGACGGCATGGGCTACGGCGACTTCAAAC
TCCTGGCCCTGCTCGGGGCCTGGGGCGGTTGGCAGATCGTGCCGATGACCCTCTTGATGGCGTCACTGGTTGGGGTATTT
GCCGGGTTGATACTGATGCGCGTGCGCAAGGCCCAGGTGTCCACGCCAATGCCATTTGGGCCCTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.357	98.264	0.524
pilD	Vibrio campbellii strain DS40M4	50.538	96.875	0.49
pilD	Neisseria gonorrhoeae MS11	51.711	91.319	0.472
pilD	Acinetobacter nosocomialis M2	46.886	94.792	0.444
pilD	Acinetobacter baumannii D1279779	46.886	94.792	0.444