Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QMY55_RS03970 Genome accession   NZ_CP125947
Coordinates   873452..874669 (-) Length   405 a.a.
NCBI ID   WP_283487409.1    Uniprot ID   -
Organism   Comamonas resistens strain ZM22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 868452..879669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY55_RS03940 (QMY55_03940) - 869237..870172 (+) 936 WP_283488876.1 ATP-binding protein -
  QMY55_RS03945 (QMY55_03945) - 870234..870686 (+) 453 WP_283488877.1 NUDIX domain-containing protein -
  QMY55_RS03950 (QMY55_03950) - 870811..871020 (-) 210 WP_283487406.1 DNA gyrase inhibitor YacG -
  QMY55_RS03955 (QMY55_03955) zapD 871093..871848 (-) 756 WP_283487407.1 cell division protein ZapD -
  QMY55_RS03960 (QMY55_03960) coaE 871934..872560 (-) 627 WP_283488878.1 dephospho-CoA kinase -
  QMY55_RS03965 (QMY55_03965) - 872583..873452 (-) 870 WP_283487408.1 A24 family peptidase -
  QMY55_RS03970 (QMY55_03970) pilC 873452..874669 (-) 1218 WP_283487409.1 type II secretion system F family protein Machinery gene
  QMY55_RS03975 (QMY55_03975) pilB 874696..876438 (-) 1743 WP_283487410.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QMY55_RS03985 (QMY55_03985) - 876689..877618 (-) 930 WP_283487411.1 polyprenyl synthetase family protein -
  QMY55_RS03990 (QMY55_03990) rplU 877850..878161 (+) 312 WP_003058536.1 50S ribosomal protein L21 -
  QMY55_RS03995 (QMY55_03995) rpmA 878178..878435 (+) 258 WP_003058534.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44623.33 Da        Isoelectric Point: 9.3515

>NTDB_id=833636 QMY55_RS03970 WP_283487409.1 873452..874669(-) (pilC) [Comamonas resistens strain ZM22]
MATAASSGIKEFVFEWEGKDRHGKIVRGETRAGGENQIQAMLRRQGVTPSKIKKRKTRSGKKIKPKDIALFTRQLATMMK
AGVPLLQAFDIVGRGNNNPSVTKLLNDIRSDVETGTSLSSAFRKFPLYFNSLYCNLVEAGEAAGILESLLDRLATYMEKT
ENIKSKIKSALMYPTSVVVVAFIVVTIIMIFVIPAFKEVFTSFGADLPAPTLIVMGISDYFVQYWWLIFGILGGGIYFFM
QAWKRNERVQQFMDRTMLKVPVFGVLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNYIYRNATEKIQQEVSTGT
SLTVAMVNANIFPSMVIQMCAIGEESGSIDHMLGKAADFFEEEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=833636 QMY55_RS03970 WP_283487409.1 873452..874669(-) (pilC) [Comamonas resistens strain ZM22]
ATGGCGACTGCAGCGTCCAGCGGTATCAAGGAGTTCGTCTTCGAGTGGGAAGGCAAGGACAGGCACGGCAAGATCGTGCG
CGGAGAAACCAGGGCTGGTGGTGAAAACCAGATCCAGGCCATGCTGCGCCGCCAGGGCGTCACGCCCTCCAAGATCAAAA
AGCGCAAGACCCGCAGCGGCAAGAAGATCAAGCCCAAGGACATTGCCCTGTTCACGCGCCAACTGGCCACCATGATGAAA
GCTGGTGTGCCGCTGCTGCAGGCCTTCGACATCGTGGGCCGTGGCAACAACAATCCCAGCGTCACCAAGCTGCTCAATGA
CATCCGCTCGGATGTGGAAACCGGCACGTCCCTGAGTTCGGCTTTCCGCAAGTTCCCTCTGTACTTCAACAGCCTTTACT
GCAACCTCGTGGAAGCGGGTGAAGCCGCCGGTATCCTGGAGTCTCTGCTGGATCGCCTGGCCACCTATATGGAAAAGACG
GAGAACATCAAGTCCAAGATCAAATCGGCATTGATGTACCCCACTTCGGTGGTCGTCGTGGCTTTCATCGTGGTGACCAT
CATCATGATTTTCGTGATTCCGGCCTTCAAGGAGGTCTTTACCTCCTTTGGTGCCGATCTTCCCGCCCCCACCTTGATCG
TCATGGGCATCAGTGACTATTTTGTGCAGTACTGGTGGCTGATCTTCGGCATTCTGGGTGGCGGCATCTACTTCTTCATG
CAGGCCTGGAAACGCAATGAACGCGTACAGCAGTTCATGGACCGCACCATGCTCAAGGTGCCCGTCTTCGGCGTACTGAT
CGAGAAGTCCTGTGTAGCGCGCTGGACGCGCACCTTGTCCACCATGTTTGCAGCCGGTGTGCCACTGGTCGAAGCCTTGG
ACTCCGTCGGCGGAGCTTCGGGCAATTACATCTACCGGAATGCCACGGAGAAGATCCAACAGGAGGTTTCCACGGGCACC
AGCCTGACCGTGGCCATGGTCAATGCCAACATCTTCCCCTCCATGGTGATCCAGATGTGCGCCATCGGCGAAGAATCCGG
CTCCATCGACCACATGCTGGGCAAGGCTGCCGACTTCTTTGAAGAAGAAGTGGACGATATGGTAGCCGGCCTTTCCAGCC
TGATGGAGCCCATCATCATCGTTTTCCTGGGTACGCTGATCGGCGGCATTGTCGTGTCCATGTATCTGCCCATCTTCAAA
CTGGGCCAAGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.208

99.753

0.541
  pilG Neisseria gonorrhoeae MS11

52.13

98.519

0.514
  pilG Neisseria meningitidis 44/76-A

51.88

98.519

0.511
  pilC Legionella pneumophila strain ERS1305867

51.759

98.272

0.509
  pilC Acinetobacter baylyi ADP1

48.995

98.272

0.481
  pilC Acinetobacter baumannii D1279779

48.363

98.025

0.474
  pilC Vibrio cholerae strain A1552

40.05

98.025

0.393
  pilC Vibrio campbellii strain DS40M4

38.308

99.259

0.38
  pilC Thermus thermophilus HB27

36.634

99.753

0.365