Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QLH32_RS09205 Genome accession   NZ_CP125669
Coordinates   1939440..1940672 (+) Length   410 a.a.
NCBI ID   WP_283266011.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1934440..1945672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS09170 (QLH32_09170) rimP 1935054..1935578 (-) 525 WP_283266007.1 ribosome maturation factor RimP -
  QLH32_RS09190 (QLH32_09190) secG 1936207..1936536 (-) 330 WP_283266008.1 preprotein translocase subunit SecG -
  QLH32_RS09195 (QLH32_09195) tpiA 1936549..1937340 (-) 792 WP_283266009.1 triose-phosphate isomerase -
  QLH32_RS09200 (QLH32_09200) pilB 1937704..1939416 (+) 1713 WP_283266010.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QLH32_RS09205 (QLH32_09205) pilC 1939440..1940672 (+) 1233 WP_283266011.1 type II secretion system F family protein Machinery gene
  QLH32_RS09210 (QLH32_09210) pilD 1940685..1941545 (+) 861 WP_283266012.1 A24 family peptidase Machinery gene
  QLH32_RS09215 (QLH32_09215) coaE 1941547..1942152 (+) 606 WP_283266013.1 dephospho-CoA kinase -
  QLH32_RS09220 (QLH32_09220) - 1942149..1943060 (-) 912 WP_283266014.1 DMT family transporter -
  QLH32_RS09225 (QLH32_09225) rlmB 1943091..1943840 (-) 750 WP_283266015.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QLH32_RS09230 (QLH32_09230) - 1944023..1944349 (-) 327 WP_004680708.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45004.42 Da        Isoelectric Point: 9.9487

>NTDB_id=832337 QLH32_RS09205 WP_283266011.1 1939440..1940672(+) (pilC) [Acinetobacter sp. KCTC 92772]
MAAKKAQMMPTFAYDGVDRKGAKIKGELPARNMALAKVTLRKQGITIKNIREKRKNILEGLTKKKVNTLDITIFTRQLAT
MMKAGVPLVQGFEIVADGLENPAMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKNELLKQKIKKAMKYPITVIIAALIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSKWMQAYWFILIIAIGVILT
AFLEAKKRSKKFRDTLDKMALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRASNRFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSIVGS

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=832337 QLH32_RS09205 WP_283266011.1 1939440..1940672(+) (pilC) [Acinetobacter sp. KCTC 92772]
ATGGCAGCTAAAAAAGCGCAAATGATGCCTACTTTTGCTTATGACGGAGTAGACCGTAAAGGGGCAAAAATTAAAGGAGA
ATTACCAGCTCGTAACATGGCTTTAGCTAAAGTCACCTTACGGAAACAAGGAATAACCATTAAAAACATTCGAGAAAAAC
GTAAAAATATTCTCGAGGGGCTAACAAAGAAAAAAGTTAACACACTGGATATTACGATATTCACACGTCAATTAGCAACC
ATGATGAAAGCAGGTGTACCATTGGTTCAAGGCTTTGAAATTGTTGCTGATGGATTAGAAAATCCTGCTATGCGTGAAGT
AGTATTAGGGATCAAAGGTGAGGTTGAGGGGGGAAATACTTTTGCTGGTGCACTCAAAAAGTATCCACAATATTTTGATA
ATCTTTTCTGCTCTTTGGTTGAGTCAGGTGAACAATCAGGTGCACTTGAAACGATGCTGGATCGTGTGGCAATTTATAAG
GAGAAAAATGAGCTTCTTAAACAAAAAATTAAAAAAGCCATGAAATATCCGATCACTGTTATTATTGCAGCACTTATAGT
CACAATTATTTTAATGGTTAAGGTAGTGCCAGTTTTTCAGGATCTATTTAGTTCTTTCGGCGCAGATTTGCCAGCGTTTA
CTAAAATGGTGGTAAATATGTCGAAGTGGATGCAAGCATATTGGTTTATTCTTATCATAGCCATCGGTGTCATTCTTACA
GCTTTCCTTGAGGCAAAGAAACGAAGTAAAAAATTTAGAGATACTTTAGATAAAATGGCACTAAAAGCACCTATTTTTGG
GGATCTAGTCTACAAGGCGATTATCGCCCGTTATAGCCGCACCTTAGCGACCACATTTGCAGCAGGTGTTCCACTTATTG
ATGCATTGGAATCAACTGCTGGTGCTACCAACAATGTTATCTATGAAGAAGCGGTAATGAAAATCCGTGAAGATGTTGCC
ACTGGTCAACAACTACAATTTGCGATGCGAGCATCCAACCGTTTCCCATCCATGGCCGTGCAGATGGTTGCAATTGGTGA
AGAATCGGGTGCACTTGATGCAATGTTAGACAAAGTAGCAACTCATTACGAAAATGAAGTAGACAATGCTGTGGATGGCT
TAACCTCTATGATGGAACCACTGATAATGGCAGTTCTAGGCGTTTTAGTGGGAGGGTTAGTTATCGCCATGTATCTACCA
ATCTTCCAAATGGGCTCTATTGTTGGTAGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.686

99.512

0.902
  pilC Acinetobacter baylyi ADP1

82.843

99.512

0.824
  pilC Pseudomonas stutzeri DSM 10701

60.099

99.024

0.595
  pilC Legionella pneumophila strain ERS1305867

53.58

98.78

0.529
  pilG Neisseria meningitidis 44/76-A

45.729

97.073

0.444
  pilG Neisseria gonorrhoeae MS11

45.729

97.073

0.444
  pilC Vibrio cholerae strain A1552

42.402

99.512

0.422
  pilC Vibrio campbellii strain DS40M4

39.851

98.537

0.393