Detailed information NTG0832338

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QLH32_RS09210
• Genome accession: NZ_CP125669
• Coordinates: 1940685..1941545 (+)
• Length: 286 a.a.
• NCBI ID: WP_283266012.1
• Uniprot ID: -
• Organism: Acinetobacter sp. KCTC 92772
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1935685..1946545

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QLH32_RS09190 (QLH32_09190)	secG	1936207..1936536 (-)	330	WP_283266008.1	preprotein translocase subunit SecG	-
QLH32_RS09195 (QLH32_09195)	tpiA	1936549..1937340 (-)	792	WP_283266009.1	triose-phosphate isomerase	-
QLH32_RS09200 (QLH32_09200)	pilB	1937704..1939416 (+)	1713	WP_283266010.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QLH32_RS09205 (QLH32_09205)	pilC	1939440..1940672 (+)	1233	WP_283266011.1	type II secretion system F family protein	Machinery gene
QLH32_RS09210 (QLH32_09210)	pilD	1940685..1941545 (+)	861	WP_283266012.1	A24 family peptidase	Machinery gene
QLH32_RS09215 (QLH32_09215)	coaE	1941547..1942152 (+)	606	WP_283266013.1	dephospho-CoA kinase	-
QLH32_RS09220 (QLH32_09220)	-	1942149..1943060 (-)	912	WP_283266014.1	DMT family transporter	-
QLH32_RS09225 (QLH32_09225)	rlmB	1943091..1943840 (-)	750	WP_283266015.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
QLH32_RS09230 (QLH32_09230)	-	1944023..1944349 (-)	327	WP_004680708.1	pyrimidine/purine nucleoside phosphorylase	-
QLH32_RS09235 (QLH32_09235)	recN	1944579..1946240 (+)	1662	WP_283266016.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31930.32 Da
• Isoelectric Point: 7.0006

>NTDB_id=832338 QLH32_RS09210 WP_283266012.1 1940685..1941545(+) (pilD) [Acinetobacter sp. KCTC 92772]
MQELIFYFIENRAALYLAVGLFSLCIGSFLNVVIFRTPKMMEQEWHQECQMLLHPEQPLIDQSKLTLSQPASTCPQCKSP
IRWYQNIPVISWIILSGKCGSCQNPISIRYPLIELLTMVCSLIVVAVFGATIQMLFGLVLTWVLITLTFIDFDTQLLPDR
FTLPLAALGLGINSFAIYTTATSAIWGYLIGFLCLWVVYYLFKLVTGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSV
VGAIIGIILMKIRGENQPFAFGPYIAIAGWIAFLWGDQIMKVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=832338 QLH32_RS09210 WP_283266012.1 1940685..1941545(+) (pilD) [Acinetobacter sp. KCTC 92772]
ATGCAAGAATTGATTTTTTATTTTATCGAAAACCGAGCTGCATTGTACCTAGCAGTTGGGCTTTTTAGTCTATGTATTGG
TAGTTTTCTCAATGTTGTTATTTTTCGTACGCCAAAAATGATGGAGCAAGAATGGCATCAGGAATGCCAAATGCTGCTTC
ATCCAGAGCAACCACTTATTGATCAAAGTAAGTTAACACTAAGCCAACCTGCCTCAACCTGTCCTCAATGTAAATCCCCT
ATTCGCTGGTATCAGAATATACCTGTAATTAGTTGGATCATACTTAGTGGTAAATGCGGTTCCTGCCAGAATCCAATTAG
TATTCGCTATCCATTGATTGAACTTCTCACCATGGTTTGTTCATTAATCGTTGTAGCAGTATTTGGTGCAACCATTCAGA
TGCTCTTTGGTTTAGTCCTCACATGGGTATTGATCACACTCACTTTTATTGATTTCGATACACAATTGCTGCCAGACCGC
TTTACGCTTCCTTTGGCAGCACTAGGCTTAGGAATTAACAGTTTTGCAATTTATACAACTGCCACGTCAGCGATTTGGGG
TTATTTGATTGGTTTCCTCTGCCTATGGGTCGTTTACTATCTTTTTAAATTGGTAACTGGTAAAGAAGGTATGGGATATG
GTGACTTTAAGTTGCTTGCTGCCTTGGGTGCATGGATGGGGCCTATGATGCTTCCGCTTATTGTCCTGCTTTCCTCAGTC
GTGGGTGCGATTATTGGTATTATTCTCATGAAGATACGTGGTGAAAATCAGCCCTTTGCCTTTGGTCCCTATATTGCGAT
TGCAGGCTGGATCGCATTTTTATGGGGAGATCAAATTATGAAAGTCTATTTAGGTGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	82.168	100	0.822
pilD	Acinetobacter baumannii D1279779	82.168	100	0.822
pilD	Vibrio cholerae strain A1552	53.184	93.357	0.497
pilD	Vibrio campbellii strain DS40M4	52.809	93.357	0.493
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437