Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QMY63_RS18580 Genome accession   NZ_CP125657
Coordinates   4335778..4337037 (+) Length   419 a.a.
NCBI ID   WP_116670567.1    Uniprot ID   -
Organism   Xanthomonas campestris strain GBBC 3077     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4330778..4342037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY63_RS18560 (QMY63_18560) pilR 4331243..4332637 (+) 1395 WP_057671663.1 sigma-54 dependent transcriptional regulator Regulator
  QMY63_RS18570 (QMY63_18570) pilB 4333056..4334762 (-) 1707 WP_181920283.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QMY63_RS18575 (QMY63_18575) pilA2 4335005..4335424 (-) 420 WP_116670568.1 pilin Machinery gene
  QMY63_RS18580 (QMY63_18580) pilC 4335778..4337037 (+) 1260 WP_116670567.1 type II secretion system F family protein Machinery gene
  QMY63_RS18585 (QMY63_18585) - 4337044..4337907 (+) 864 WP_116670566.1 A24 family peptidase -
  QMY63_RS18590 (QMY63_18590) coaE 4337921..4338544 (+) 624 WP_116670565.1 dephospho-CoA kinase -
  QMY63_RS18595 (QMY63_18595) - 4339076..4339477 (+) 402 WP_040940795.1 SymE family type I addiction module toxin -
  QMY63_RS18600 (QMY63_18600) - 4339552..4339842 (+) 291 WP_011038219.1 DUF1778 domain-containing protein -
  QMY63_RS18605 (QMY63_18605) - 4339839..4340315 (+) 477 WP_283273020.1 GNAT family N-acetyltransferase -
  QMY63_RS18610 (QMY63_18610) - 4340472..4341806 (-) 1335 WP_237351399.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46030.52 Da        Isoelectric Point: 10.2875

>NTDB_id=832144 QMY63_RS18580 WP_116670567.1 4335778..4337037(+) (pilC) [Xanthomonas campestris strain GBBC 3077]
MSVARSAIKKQPIDRNTSLLQTFVWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITAKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAMVVAVAIVVSAILLIFVVPQFEEVFKNFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSIVGFIFAYKRSPRMQHALDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=832144 QMY63_RS18580 WP_116670567.1 4335778..4337037(+) (pilC) [Xanthomonas campestris strain GBBC 3077]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGATCGACCGGAACACCAGCCTGCTGCAGACCTTCGTTTGGGAAGG
AGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCGCTGTTCGGAGCGGCGGGCAAGAAAATTACCGCCAAAGAC
ATTGCGTTCTTTAGCCGTCAGATGGCGACGATGATGAAGTCAGGCGTGCCCATCGTCAGTTCTCTGGAGATCATCGGCGA
GGGACACAAGAACCCACGCATGAAGAAGATGGTCGGCCAGGTCAGGACTGACATTGAGGGGGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTCCAGTTTGACGAGCTCTACCGCAATCTTGTCCGCGCGGGCGAAGGTGCCGGCGTACTGGAG
ACAGTCCTAGATACGGTCGCAACGTACAAAGAGAACATTGAAGCCCTCAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCCGTGGCAATCGTTGTAAGTGCGATTTTGCTTATCTTCGTGGTACCTCAGTTCGAAGAGGTATTCA
AGAATTTCGGCGCTGAACTACCGGCATTCACTCAGCTGCTCGTCAATGCCTCGCGCTTTATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTATCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGCACTTGA
CCGGTTGATCCTCAAGGTCCCAGTGATTGGGCAGATCATGCACAACAGCGCAATTGCACGTTTTGCACGCACTACTGCCG
TAACGTTCAAGGCAGGCGTACCTCTCGTCGAGGCACTTGGGATCGTTGCAGGTGCCACCGGCAACAAGGTCTACGAAGAG
GCCGTACTGCGGATGCGCGACGACGTATCGGTCGGCTATCCGGTGAACATGGCGATGAAACAAGTGAATCTGTTTCCGCA
CATGGTGGTGCAGATGACCGCAATCGGCGAGGAAGCAGGCGCCTTGGATACCATGTTATTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTTAACAACGCCGTGGACGCGCTCAGCAGCCTGCTTGAACCACTGATCATGGTGTTCATCGGCACCATCGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.511

0.513
  pilC Legionella pneumophila strain ERS1305867

52.463

96.897

0.508
  pilC Acinetobacter baylyi ADP1

51.358

96.659

0.496
  pilC Acinetobacter baumannii D1279779

50.123

96.659

0.484
  pilG Neisseria gonorrhoeae MS11

43.609

95.227

0.415
  pilG Neisseria meningitidis 44/76-A

43.108

95.227

0.411
  pilC Vibrio cholerae strain A1552

40.25

95.465

0.384
  pilC Vibrio campbellii strain DS40M4

39

95.465

0.372
  pilC Thermus thermophilus HB27

38.75

95.465

0.37