Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QMY63_RS18560 Genome accession   NZ_CP125657
Coordinates   4331243..4332637 (+) Length   464 a.a.
NCBI ID   WP_057671663.1    Uniprot ID   -
Organism   Xanthomonas campestris strain GBBC 3077     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4326243..4337637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY63_RS18535 (QMY63_18535) - 4326301..4326603 (-) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QMY63_RS18540 (QMY63_18540) - 4326607..4327017 (-) 411 WP_029628876.1 DNA-binding protein -
  QMY63_RS18545 (QMY63_18545) sucD 4327121..4327996 (-) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  QMY63_RS18550 (QMY63_18550) sucC 4328021..4329190 (-) 1170 WP_012437609.1 ADP-forming succinate--CoA ligase subunit beta -
  QMY63_RS18555 (QMY63_18555) - 4329424..4331034 (+) 1611 WP_237351400.1 HAMP domain-containing sensor histidine kinase -
  QMY63_RS18560 (QMY63_18560) pilR 4331243..4332637 (+) 1395 WP_057671663.1 sigma-54 dependent transcriptional regulator Regulator
  QMY63_RS18570 (QMY63_18570) pilB 4333056..4334762 (-) 1707 WP_181920283.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QMY63_RS18575 (QMY63_18575) pilA2 4335005..4335424 (-) 420 WP_116670568.1 pilin Machinery gene
  QMY63_RS18580 (QMY63_18580) pilC 4335778..4337037 (+) 1260 WP_116670567.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50279.66 Da        Isoelectric Point: 6.5131

>NTDB_id=832141 QMY63_RS18560 WP_057671663.1 4331243..4332637(+) (pilR) [Xanthomonas campestris strain GBBC 3077]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=832141 QMY63_RS18560 WP_057671663.1 4331243..4332637(+) (pilR) [Xanthomonas campestris strain GBBC 3077]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAACTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTACTTACCCAGTCCGCGCTCGA
TGCCTTGAACCAATACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAACATCCTCGAGCGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCATCGCCTTGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCGGTCGTCGACATCGATCCGGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAATTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.353

100

0.494