Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QMK57_RS04335 Genome accession   NZ_CP125381
Coordinates   959621..960829 (-) Length   402 a.a.
NCBI ID   WP_320400225.1    Uniprot ID   -
Organism   Pseudomonas marginalis strain PS92     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 954621..965829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK57_RS04295 (QMK57_04300) - 954643..955941 (-) 1299 WP_122810036.1 NAD(P)/FAD-dependent oxidoreductase -
  QMK57_RS04300 (QMK57_04305) - 956002..956175 (-) 174 WP_012722154.1 DUF3094 family protein -
  QMK57_RS04305 (QMK57_04310) - 956230..956859 (-) 630 WP_010213242.1 DUF1780 domain-containing protein -
  QMK57_RS04310 (QMK57_04315) - 956964..957653 (+) 690 WP_320400223.1 energy-coupling factor ABC transporter permease -
  QMK57_RS04315 (QMK57_04320) - 957729..957944 (+) 216 WP_012722156.1 hypothetical protein -
  QMK57_RS04320 (QMK57_04325) yacG 957941..958141 (-) 201 WP_064054725.1 DNA gyrase inhibitor YacG -
  QMK57_RS04325 (QMK57_04330) coaE 958138..958761 (-) 624 WP_012722158.1 dephospho-CoA kinase -
  QMK57_RS04330 (QMK57_04335) pilD 958758..959624 (-) 867 WP_320400224.1 A24 family peptidase Machinery gene
  QMK57_RS04335 (QMK57_04340) pilC 959621..960829 (-) 1209 WP_320400225.1 type II secretion system F family protein Machinery gene
  QMK57_RS04340 (QMK57_04345) - 961032..961445 (+) 414 WP_043206123.1 pilin -
  QMK57_RS04345 (QMK57_04350) - 961482..962882 (+) 1401 WP_320400226.1 O-antigen ligase family protein -
  QMK57_RS04355 (QMK57_04360) - 963163..963468 (+) 306 WP_012722163.1 DUF6388 family protein -
  QMK57_RS04360 (QMK57_04365) nadC 964275..965123 (-) 849 WP_102061568.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43221.58 Da        Isoelectric Point: 10.1238

>NTDB_id=831695 QMK57_RS04335 WP_320400225.1 959621..960829(-) (pilC) [Pseudomonas marginalis strain PS92]
MDNAATIYAWEGINRKGRRVSGQTTGHNLALVKAQLRRQGISPGAVYKKSALLPSLAPSIKSADITLLTRQLATLLKAGI
PLLQAFDIIGEGFESRPVRELVQGLKQAIAAGTSLAEALRKQPRYFDELYCNLVAAGEQAGALETLLERVAIHREKSEQL
RARIKKAMTYPIAVLVVASLVTGVLLIQVVPQFKSLFAGVDGKLPEFTLQVIALSEFTQKAWWVVALGMLAGGLGWRQAY
RTFPDFRLRVDAGLLKAPLAGKLLKKSAVARYARTLSTTFAAGVPLVQALDSVAGAAGSGPFRQAIEHMRHDVSTGMQLN
QSMAASGLFPGMAIQMTAIGEESGTLDRMLEKVANHYEADVDNLVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=831695 QMK57_RS04335 WP_320400225.1 959621..960829(-) (pilC) [Pseudomonas marginalis strain PS92]
ATGGACAACGCTGCAACGATCTACGCCTGGGAAGGCATCAACCGCAAAGGACGCAGGGTGTCCGGGCAAACCACGGGGCA
CAACCTTGCCCTGGTCAAGGCTCAGTTGCGCCGGCAAGGCATCAGCCCAGGGGCTGTGTACAAGAAATCCGCTTTGCTAC
CGAGCCTCGCGCCGTCGATCAAATCGGCGGACATCACCCTGCTAACTCGACAGCTGGCCACGCTGCTGAAGGCTGGAATC
CCACTTCTACAAGCCTTCGACATTATCGGTGAAGGCTTCGAAAGCCGCCCTGTGCGCGAGCTGGTGCAGGGGTTGAAACA
GGCAATCGCCGCCGGCACCAGCCTGGCCGAGGCGCTGCGCAAACAACCGCGCTATTTCGATGAGCTGTACTGCAACCTGG
TGGCCGCCGGCGAACAGGCTGGCGCACTTGAAACGCTGCTGGAGCGCGTGGCGATCCACCGCGAAAAGAGCGAGCAGCTA
CGGGCCAGGATCAAAAAGGCCATGACCTATCCGATCGCAGTCCTGGTGGTCGCCAGCCTGGTCACCGGCGTGCTGCTGAT
ACAGGTAGTGCCACAGTTCAAGAGTTTGTTCGCCGGGGTCGACGGCAAGCTGCCCGAGTTCACCTTGCAGGTCATCGCCC
TCTCCGAGTTCACGCAAAAAGCCTGGTGGGTCGTGGCCCTGGGCATGCTTGCCGGAGGCTTGGGGTGGCGCCAAGCGTAT
CGCACCTTCCCTGATTTTCGTCTGCGGGTAGACGCCGGTTTGTTGAAAGCGCCCCTGGCAGGCAAACTGCTGAAAAAATC
CGCAGTGGCCCGCTACGCCCGTACGCTTTCCACCACCTTCGCCGCCGGTGTTCCATTGGTGCAGGCGTTGGATTCCGTGG
CCGGCGCCGCCGGTTCGGGGCCATTCAGACAGGCAATCGAGCATATGCGACATGATGTATCCACCGGTATGCAATTGAAT
CAATCCATGGCCGCCAGCGGCCTGTTTCCCGGCATGGCGATCCAGATGACGGCCATCGGCGAAGAGTCGGGCACGTTGGA
CCGCATGCTGGAAAAAGTCGCCAACCATTACGAGGCCGATGTGGACAACCTGGTCGATAACCTCACCAGCCTGATGGAAC
CGCTGATCATGGTGGTATTGGGGGGCATCGTCGGCGCGCTGGTGATCGCCATGTACCTGCCGGTCTTTCAGTTGGGGAGC
GCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.494

98.259

0.585
  pilC Acinetobacter baylyi ADP1

50.505

98.507

0.498
  pilC Legionella pneumophila strain ERS1305867

50

98.507

0.493
  pilC Acinetobacter baumannii D1279779

49.873

98.259

0.49
  pilC Vibrio cholerae strain A1552

41.96

99.005

0.415
  pilG Neisseria gonorrhoeae MS11

40.682

94.776

0.386
  pilC Vibrio campbellii strain DS40M4

39.086

98.01

0.383
  pilG Neisseria meningitidis 44/76-A

39.895

94.776

0.378
  pilC Thermus thermophilus HB27

37.406

99.751

0.373