Detailed information NTG0831694

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QMK57_RS04330
• Genome accession: NZ_CP125381
• Coordinates: 958758..959624 (-)
• Length: 288 a.a.
• NCBI ID: WP_320400224.1
• Uniprot ID: -
• Organism: Pseudomonas marginalis strain PS92
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 953758..964624

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMK57_RS04295 (QMK57_04300)	-	954643..955941 (-)	1299	WP_122810036.1	NAD(P)/FAD-dependent oxidoreductase	-
QMK57_RS04300 (QMK57_04305)	-	956002..956175 (-)	174	WP_012722154.1	DUF3094 family protein	-
QMK57_RS04305 (QMK57_04310)	-	956230..956859 (-)	630	WP_010213242.1	DUF1780 domain-containing protein	-
QMK57_RS04310 (QMK57_04315)	-	956964..957653 (+)	690	WP_320400223.1	energy-coupling factor ABC transporter permease	-
QMK57_RS04315 (QMK57_04320)	-	957729..957944 (+)	216	WP_012722156.1	hypothetical protein	-
QMK57_RS04320 (QMK57_04325)	yacG	957941..958141 (-)	201	WP_064054725.1	DNA gyrase inhibitor YacG	-
QMK57_RS04325 (QMK57_04330)	coaE	958138..958761 (-)	624	WP_012722158.1	dephospho-CoA kinase	-
QMK57_RS04330 (QMK57_04335)	pilD	958758..959624 (-)	867	WP_320400224.1	A24 family peptidase	Machinery gene
QMK57_RS04335 (QMK57_04340)	pilC	959621..960829 (-)	1209	WP_320400225.1	type II secretion system F family protein	Machinery gene
QMK57_RS04340 (QMK57_04345)	-	961032..961445 (+)	414	WP_043206123.1	pilin	-
QMK57_RS04345 (QMK57_04350)	-	961482..962882 (+)	1401	WP_320400226.1	O-antigen ligase family protein	-
QMK57_RS04355 (QMK57_04360)	-	963163..963468 (+)	306	WP_012722163.1	DUF6388 family protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31717.87 Da
• Isoelectric Point: 7.9972

>NTDB_id=831694 QMK57_RS04330 WP_320400224.1 958758..959624(-) (pilD) [Pseudomonas marginalis strain PS92]
MSLLLVEQPWAFVAMAGVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPAEPAGPTYNLMHPNSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCQGPISARYPLTELACGLISAWVAWHFGVGWQAGAMLVLSWGLLAMSLIDADHQLLPDALVMP
LLWLGLIVNALGLLTTLPDALWGAVIGYMSLWSVFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMTLLISSLVGVF
VGLILMRLRKARASTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=831694 QMK57_RS04330 WP_320400224.1 958758..959624(-) (pilD) [Pseudomonas marginalis strain PS92]
TTGAGCCTGCTATTGGTTGAACAGCCCTGGGCTTTTGTGGCGATGGCCGGGGTGCTGGGGCTGATCGTCGGCAGTTTTCT
CAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTCGAACGGGAATGGCGCGCCCAGGCCCACGAAGTGCTCGGCTTGCCCG
CTGAGCCTGCCGGGCCGACCTACAACCTGATGCACCCCAACTCCTGCTGCCCGCACTGCAACCATCCGATACGCCCATGG
GAAAATATCCCGTTGCTCAGTTACCTGTTTCTGCGCGGCCGCTGCGCCCATTGCCAAGGCCCGATCAGCGCCCGCTATCC
ACTCACTGAACTGGCGTGCGGGTTGATCTCGGCCTGGGTGGCCTGGCATTTCGGCGTTGGCTGGCAGGCGGGCGCGATGC
TGGTGCTGAGTTGGGGCTTGTTGGCGATGAGCCTGATCGATGCCGACCATCAACTGTTGCCGGATGCGCTGGTGATGCCG
CTGCTCTGGCTGGGACTGATCGTCAACGCGCTTGGCCTGCTGACGACGCTACCCGATGCCCTCTGGGGCGCGGTTATCGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGCCACCGGCAAGGACGGCATGGGCCACGGCGACTTCAAGC
TGCTGGCACTGCTCGGTGCCTGGGGTGGCTGGCAGATCCTGCCGATGACACTGCTGATATCGTCGCTGGTCGGGGTGTTC
GTGGGCTTGATCCTGATGCGCCTGCGCAAGGCCCGGGCGTCGACACCGATGCCGTTTGGTCCGTATCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.036	96.528	0.531
pilD	Vibrio campbellii strain DS40M4	51.254	96.875	0.497
pilD	Neisseria gonorrhoeae MS11	51.481	93.75	0.483
pilD	Acinetobacter nosocomialis M2	48.718	94.792	0.462
pilD	Acinetobacter baumannii D1279779	48.718	94.792	0.462