Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QMK54_RS26695 Genome accession   NZ_CP125380
Coordinates   6020438..6021655 (+) Length   405 a.a.
NCBI ID   WP_110657299.1    Uniprot ID   -
Organism   Pseudomonas sp. P5_109     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6015438..6026655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK54_RS26675 (QMK54_26655) - 6015605..6018568 (+) 2964 WP_320401598.1 DUF748 domain-containing protein -
  QMK54_RS26680 (QMK54_26660) - 6018568..6018864 (+) 297 WP_223594571.1 DUF2845 domain-containing protein -
  QMK54_RS26685 (QMK54_26665) - 6019133..6019489 (-) 357 WP_223594573.1 BON domain-containing protein -
  QMK54_RS26690 (QMK54_26670) - 6019791..6020210 (-) 420 WP_320401599.1 pilin -
  QMK54_RS26695 (QMK54_26675) pilC 6020438..6021655 (+) 1218 WP_110657299.1 type II secretion system F family protein Machinery gene
  QMK54_RS26700 (QMK54_26680) pilD 6021657..6022529 (+) 873 WP_320401600.1 A24 family peptidase Machinery gene
  QMK54_RS26705 (QMK54_26685) coaE 6022526..6023149 (+) 624 WP_223594578.1 dephospho-CoA kinase -
  QMK54_RS26710 (QMK54_26690) yacG 6023146..6023346 (+) 201 WP_007970539.1 DNA gyrase inhibitor YacG -
  QMK54_RS26715 (QMK54_26695) - 6023381..6024070 (-) 690 WP_223594705.1 energy-coupling factor ABC transporter permease -
  QMK54_RS26720 (QMK54_26700) - 6024142..6025074 (-) 933 WP_110657291.1 LysR family transcriptional regulator -
  QMK54_RS26725 (QMK54_26705) - 6025196..6025438 (+) 243 WP_223594580.1 DUF2790 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44157.05 Da        Isoelectric Point: 10.1746

>NTDB_id=831681 QMK54_RS26695 WP_110657299.1 6020438..6021655(+) (pilC) [Pseudomonas sp. P5_109]
MAVKAAKISVYAWEGIDRKGTKVTGELSAQNPALIKAKLRRQGISPGKVRKKNQSVFNMGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRTLVDELKQEVAAGSSFAAALRKKPRYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKARIRKAMTYPLVVVFVAAIVTGILLVNVVPQFESVFKGFGAELPAFTVMVIGLSQFMQAWWWVVLGALVTMAFGMR
HALRTSPACRDRTDTWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALESVAGATGNIVFKRAVLRIRQDVSTGM
QLNFAMRTSGVFPNMAIQMTAIGEESGALDAMLDKVAGFYEDNVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=831681 QMK54_RS26695 WP_110657299.1 6020438..6021655(+) (pilC) [Pseudomonas sp. P5_109]
ATGGCGGTCAAGGCAGCGAAAATCAGCGTGTATGCATGGGAAGGCATTGACCGCAAAGGCACAAAGGTAACCGGTGAGCT
CAGCGCTCAAAACCCCGCGCTGATCAAGGCGAAACTGCGCAGGCAAGGCATCAGTCCCGGCAAGGTTCGCAAAAAGAACC
AGTCGGTTTTCAACATGGGCAAGCGCATCAAGGCCCAGGACATTGCCCTGTTCACCCGGCAAATGGCGACGATGATGAAG
GCCGGCGTGCCGTTGCTGCAGTCGTTCGACATCATCGGCGAAGGCTTTGACAATCCGGCCATGCGCACGCTGGTGGACGA
ACTGAAACAGGAAGTCGCGGCAGGCAGCAGTTTCGCCGCCGCCCTGCGCAAGAAACCCCGGTATTTCGATGAACTGTATT
GCAACCTGGTGGATGCCGGCGAGCAGGCCGGTGCCCTCGATACCCTTTTGGAGCGGGTCGCGACCTACAAGGAAAAAAGC
GAAAGTCTCAAGGCCAGGATCAGGAAAGCCATGACCTACCCGCTGGTGGTGGTGTTCGTCGCGGCGATTGTCACCGGGAT
TCTGCTGGTCAATGTCGTGCCGCAGTTCGAGTCGGTGTTCAAAGGCTTCGGCGCCGAACTGCCGGCCTTCACCGTGATGG
TCATTGGCCTGTCGCAATTCATGCAGGCCTGGTGGTGGGTGGTCCTCGGCGCGCTGGTAACGATGGCCTTCGGCATGCGT
CACGCCCTCAGGACATCCCCGGCCTGCCGTGACCGGACGGACACCTGGCTGCTTAAACTGCCGCTGGTTGGCACATTGAT
GTACAAGTCCGCCGTGGCCCGATTCGCCCGTACGCTGTCGACTACTTTCGCGGCCGGCGTGCCACTGGTAGAGGCCCTGG
AATCAGTGGCCGGCGCGACCGGCAACATCGTTTTCAAGCGTGCGGTATTGCGCATCCGCCAGGACGTTTCGACCGGCATG
CAATTGAATTTCGCCATGCGTACCTCCGGCGTCTTTCCGAACATGGCGATACAGATGACCGCCATCGGCGAAGAGTCAGG
CGCCCTGGACGCTATGCTCGACAAAGTCGCGGGGTTCTACGAAGACAACGTCGATAACATGGTCGATAACCTCACCAGCC
TGATGGAACCGTTCATCATGGTGGTGCTGGGTGTTATCGTCGGTGGACTGGTAGTTGCCATGTACCTGCCCATCTTCCAA
CTTGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

70.864

100

0.709
  pilC Acinetobacter baylyi ADP1

57.353

100

0.578
  pilC Acinetobacter baumannii D1279779

57.108

100

0.575
  pilC Legionella pneumophila strain ERS1305867

53.535

97.778

0.523
  pilC Vibrio cholerae strain A1552

43.182

97.778

0.422
  pilG Neisseria gonorrhoeae MS11

42.289

99.259

0.42
  pilG Neisseria meningitidis 44/76-A

41.481

100

0.415
  pilC Vibrio campbellii strain DS40M4

40.64

100

0.407
  pilC Thermus thermophilus HB27

38.155

99.012

0.378