NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	QMK54_RS26700	Genome accession	NZ_CP125380
Coordinates	6021657..6022529 (+)	Length	290 a.a.
NCBI ID	WP_320401600.1	Uniprot ID	-
Organism	Pseudomonas sp. P5_109
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6016657..6027529

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMK54_RS26680 (QMK54_26660)	-	6018568..6018864 (+)	297	WP_223594571.1	DUF2845 domain-containing protein	-
QMK54_RS26685 (QMK54_26665)	-	6019133..6019489 (-)	357	WP_223594573.1	BON domain-containing protein	-
QMK54_RS26690 (QMK54_26670)	-	6019791..6020210 (-)	420	WP_320401599.1	pilin	-
QMK54_RS26695 (QMK54_26675)	pilC	6020438..6021655 (+)	1218	WP_110657299.1	type II secretion system F family protein	Machinery gene
QMK54_RS26700 (QMK54_26680)	pilD	6021657..6022529 (+)	873	WP_320401600.1	A24 family peptidase	Machinery gene
QMK54_RS26705 (QMK54_26685)	coaE	6022526..6023149 (+)	624	WP_223594578.1	dephospho-CoA kinase	-
QMK54_RS26710 (QMK54_26690)	yacG	6023146..6023346 (+)	201	WP_007970539.1	DNA gyrase inhibitor YacG	-
QMK54_RS26715 (QMK54_26695)	-	6023381..6024070 (-)	690	WP_223594705.1	energy-coupling factor ABC transporter permease	-
QMK54_RS26720 (QMK54_26700)	-	6024142..6025074 (-)	933	WP_110657291.1	LysR family transcriptional regulator	-
QMK54_RS26725 (QMK54_26705)	-	6025196..6025438 (+)	243	WP_223594580.1	DUF2790 domain-containing protein	-
QMK54_RS26730 (QMK54_26710)	-	6025447..6026715 (-)	1269	WP_110657287.1	OprD family porin	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32118.32 Da Isoelectric Point: 7.7034

                                >NTDB_id=831682 QMK54_RS26700 WP_320401600.1 6021657..6022529(+) (pilD) [Pseudomonas sp. P5_109]

MPLNEILTHFPLAFVLLAGITGLLVGSFLNVVIWRLPKMLERDWREQAHDILGLSGETPVPTYNLLLPHSQCPHCAHRIR

AWENIPLLSYVFLRGRCSACAAAISPRYPLTELACGALSAFVAWHFGFGWPACLVMVLSWGLLAMSLIDAEHQILPDVLV

LPLLWLGLIINSFGLFASLHEALWGAIAGYSVLWAVFWLFKLITGKDGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG

AIIGLMMLRWRNAKTSTPIPFGPYLAIAGWIALLWGGQITDLYWQFVGLK

Nucleotide

Download Length: 873 bp

                                >NTDB_id=831682 QMK54_RS26700 WP_320401600.1 6021657..6022529(+) (pilD) [Pseudomonas sp. P5_109]

ATGCCCTTGAATGAAATTCTGACCCACTTTCCGCTGGCCTTTGTCCTTCTCGCAGGCATCACCGGCCTGCTGGTCGGCAG

TTTCCTCAATGTCGTGATCTGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGTGAGCAGGCTCATGACATTCTCGGGC

TGTCTGGCGAAACGCCGGTGCCCACCTACAACCTGCTGCTGCCCCATTCCCAATGCCCGCACTGCGCTCACCGGATCCGC

GCCTGGGAAAACATTCCGCTGCTCAGTTATGTGTTTTTGCGCGGCCGCTGTTCAGCCTGCGCGGCGGCGATCAGCCCGCG

CTATCCGTTAACCGAACTGGCTTGTGGCGCGCTATCGGCGTTTGTCGCCTGGCACTTCGGCTTCGGTTGGCCAGCCTGCC

TGGTGATGGTCCTGAGCTGGGGTTTGCTGGCGATGAGCCTGATCGACGCCGAACATCAGATATTGCCAGACGTGCTGGTG

CTGCCATTGCTATGGCTGGGGTTGATCATCAACAGTTTCGGCCTATTCGCGTCGTTGCACGAGGCGCTTTGGGGGGCGAT

TGCCGGCTACAGCGTGCTGTGGGCGGTGTTCTGGCTGTTCAAGCTGATCACGGGCAAGGACGGCATGGGCTACGGTGATT

TCAAGCTGCTGGCGATGCTGGGCGCCTGGGGTGGCTGGCAGATTTTGCCGCTGACCATCCTGCTGTCTTCGCTGGTGGGT

GCCATTATCGGCTTGATGATGCTGCGCTGGCGCAATGCAAAAACCTCGACGCCGATCCCTTTCGGTCCCTATCTGGCCAT

TGCCGGCTGGATTGCGTTGCTCTGGGGTGGTCAAATAACCGATCTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(136-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	52.482	97.241	0.51
pilD	Vibrio campbellii strain DS40M4	50	97.241	0.486
pilD	Acinetobacter baumannii D1279779	46.69	98.966	0.462
pilD	Acinetobacter nosocomialis M2	46.69	98.966	0.462
pilD	Neisseria gonorrhoeae MS11	49.612	88.966	0.441

Detailed information NTG0831682