Detailed information
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | QMK52_RS03140 | Genome accession | NZ_CP125376 |
| Coordinates | 730372..731580 (+) | Length | 402 a.a. |
| NCBI ID | WP_194440117.1 | Uniprot ID | A0A7S7S5U5 |
| Organism | Pseudomonas sp. P9_2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 725372..736580
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMK52_RS03115 (QMK52_03115) | - | 725845..727998 (-) | 2154 | WP_005784691.1 | DUF1631 domain-containing protein | - |
| QMK52_RS03120 (QMK52_03120) | nadC | 728244..729092 (+) | 849 | WP_005784689.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| QMK52_RS03125 (QMK52_03125) | - | 729167..729472 (-) | 306 | WP_005784687.1 | DUF6388 family protein | - |
| QMK52_RS03135 (QMK52_03135) | - | 729759..730172 (-) | 414 | WP_005784685.1 | pilin | - |
| QMK52_RS03140 (QMK52_03140) | pilC | 730372..731580 (+) | 1209 | WP_194440117.1 | type II secretion system F family protein | Machinery gene |
| QMK52_RS03145 (QMK52_03145) | pilD | 731577..732443 (+) | 867 | WP_194440116.1 | prepilin peptidase | Machinery gene |
| QMK52_RS03150 (QMK52_03150) | coaE | 732440..733063 (+) | 624 | WP_032877844.1 | dephospho-CoA kinase | - |
| QMK52_RS03155 (QMK52_03155) | yacG | 733060..733260 (+) | 201 | WP_005784677.1 | DNA gyrase inhibitor YacG | - |
| QMK52_RS03160 (QMK52_03160) | - | 733257..733472 (-) | 216 | WP_003171680.1 | hypothetical protein | - |
| QMK52_RS03165 (QMK52_03165) | - | 733539..734228 (-) | 690 | WP_005784673.1 | energy-coupling factor ABC transporter permease | - |
| QMK52_RS03170 (QMK52_03170) | - | 734503..735132 (+) | 630 | WP_003188431.1 | DUF1780 domain-containing protein | - |
| QMK52_RS03175 (QMK52_03175) | - | 735186..735359 (+) | 174 | WP_005784671.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 402 a.a. Molecular weight: 43754.29 Da Isoelectric Point: 9.7686
>NTDB_id=831559 QMK52_RS03140 WP_194440117.1 730372..731580(+) (pilC) [Pseudomonas sp. P9_2]
MNDTSTIYAWEGINRKGRRVTGQTAGDSLALIKAQLRQQGICPERVCKKPRSRSAFTPRILPADIALFTRQLATLLKAGI
PLLQAFDIISEGFENPQVRELVKALKQQIASGNNLAAALRLHPRYFDDLYCNLVAAGEQAGALETLLERVAIHLEKSQQL
KARIKKAMTYPVAVLVVATLVSTVLLIHVVPQFQHLFAGVDSQLPGFTLGVIALSEFLQQAWWILVLGLVVGVGGLRHAY
RRYPGFRHCLQGHLLKAPLAGKLLQKTAVARYARTLSTTFAAGVPLVQALGSVAGAVGNDPFKQAIERMRHDVSTGMQLN
QSMHSCGLFPGMAIQMTAIGEESGTLDRMLEKVANHYESDVDTLVDNLTSLMEPLIMVVLGAIVGALVIAMYLPVFQLGT
AF
MNDTSTIYAWEGINRKGRRVTGQTAGDSLALIKAQLRQQGICPERVCKKPRSRSAFTPRILPADIALFTRQLATLLKAGI
PLLQAFDIISEGFENPQVRELVKALKQQIASGNNLAAALRLHPRYFDDLYCNLVAAGEQAGALETLLERVAIHLEKSQQL
KARIKKAMTYPVAVLVVATLVSTVLLIHVVPQFQHLFAGVDSQLPGFTLGVIALSEFLQQAWWILVLGLVVGVGGLRHAY
RRYPGFRHCLQGHLLKAPLAGKLLQKTAVARYARTLSTTFAAGVPLVQALGSVAGAVGNDPFKQAIERMRHDVSTGMQLN
QSMHSCGLFPGMAIQMTAIGEESGTLDRMLEKVANHYESDVDTLVDNLTSLMEPLIMVVLGAIVGALVIAMYLPVFQLGT
AF
Nucleotide
Download Length: 1209 bp
>NTDB_id=831559 QMK52_RS03140 WP_194440117.1 730372..731580(+) (pilC) [Pseudomonas sp. P9_2]
ATGAACGACACGTCAACGATCTATGCCTGGGAAGGTATCAACCGCAAAGGACGCAGGGTGACCGGGCAAACCGCTGGCGA
CAGCCTTGCGCTGATCAAGGCACAACTGCGCCAGCAAGGGATCTGCCCCGAGCGTGTGTGCAAGAAGCCTCGATCACGCT
CGGCTTTCACCCCGCGAATCCTGCCAGCCGATATCGCCCTGTTTACTCGCCAGTTGGCGACCTTGCTCAAAGCCGGCATC
CCGCTGCTGCAAGCCTTCGACATCATCAGTGAAGGTTTTGAAAACCCGCAGGTGCGTGAACTGGTCAAGGCGTTGAAACA
ACAGATCGCCAGCGGCAATAACCTGGCCGCAGCGCTACGCCTGCACCCGCGTTACTTCGATGACCTGTACTGCAACCTGG
TAGCTGCCGGAGAACAGGCCGGTGCTTTGGAAACCCTGCTGGAGCGCGTGGCAATTCATCTGGAAAAAAGCCAACAGCTC
AAAGCCAGGATCAAAAAAGCCATGACTTACCCTGTCGCAGTCCTGGTAGTCGCTACACTAGTCAGCACAGTGCTGTTGAT
ACACGTCGTGCCTCAGTTCCAGCATCTGTTTGCCGGGGTCGACAGCCAACTGCCCGGGTTTACCCTGGGGGTCATTGCCC
TGTCCGAGTTCTTGCAACAAGCGTGGTGGATACTCGTGCTGGGCCTGGTCGTGGGGGTGGGCGGGCTGCGCCACGCCTAC
CGCCGTTACCCTGGCTTTCGCCATTGTCTGCAAGGGCATTTGTTGAAAGCGCCCCTGGCAGGCAAACTGCTGCAAAAAAC
CGCCGTCGCCCGCTACGCCCGCACGCTTTCGACCACGTTTGCAGCGGGTGTCCCGCTGGTCCAGGCATTGGGCTCGGTAG
CCGGAGCCGTCGGCAATGACCCCTTCAAACAGGCAATCGAACGTATGCGCCACGATGTATCCACAGGCATGCAGTTGAAT
CAATCCATGCACAGCTGCGGTTTGTTTCCCGGCATGGCGATCCAGATGACCGCCATTGGAGAGGAGTCCGGCACCCTGGA
CCGGATGCTGGAAAAAGTCGCGAACCACTACGAGTCGGACGTCGACACCCTGGTCGATAACCTCACCAGCCTGATGGAGC
CGCTGATCATGGTTGTCCTGGGGGCCATTGTCGGCGCGCTGGTGATCGCGATGTACCTGCCGGTCTTTCAATTGGGTACG
GCCTTTTGA
ATGAACGACACGTCAACGATCTATGCCTGGGAAGGTATCAACCGCAAAGGACGCAGGGTGACCGGGCAAACCGCTGGCGA
CAGCCTTGCGCTGATCAAGGCACAACTGCGCCAGCAAGGGATCTGCCCCGAGCGTGTGTGCAAGAAGCCTCGATCACGCT
CGGCTTTCACCCCGCGAATCCTGCCAGCCGATATCGCCCTGTTTACTCGCCAGTTGGCGACCTTGCTCAAAGCCGGCATC
CCGCTGCTGCAAGCCTTCGACATCATCAGTGAAGGTTTTGAAAACCCGCAGGTGCGTGAACTGGTCAAGGCGTTGAAACA
ACAGATCGCCAGCGGCAATAACCTGGCCGCAGCGCTACGCCTGCACCCGCGTTACTTCGATGACCTGTACTGCAACCTGG
TAGCTGCCGGAGAACAGGCCGGTGCTTTGGAAACCCTGCTGGAGCGCGTGGCAATTCATCTGGAAAAAAGCCAACAGCTC
AAAGCCAGGATCAAAAAAGCCATGACTTACCCTGTCGCAGTCCTGGTAGTCGCTACACTAGTCAGCACAGTGCTGTTGAT
ACACGTCGTGCCTCAGTTCCAGCATCTGTTTGCCGGGGTCGACAGCCAACTGCCCGGGTTTACCCTGGGGGTCATTGCCC
TGTCCGAGTTCTTGCAACAAGCGTGGTGGATACTCGTGCTGGGCCTGGTCGTGGGGGTGGGCGGGCTGCGCCACGCCTAC
CGCCGTTACCCTGGCTTTCGCCATTGTCTGCAAGGGCATTTGTTGAAAGCGCCCCTGGCAGGCAAACTGCTGCAAAAAAC
CGCCGTCGCCCGCTACGCCCGCACGCTTTCGACCACGTTTGCAGCGGGTGTCCCGCTGGTCCAGGCATTGGGCTCGGTAG
CCGGAGCCGTCGGCAATGACCCCTTCAAACAGGCAATCGAACGTATGCGCCACGATGTATCCACAGGCATGCAGTTGAAT
CAATCCATGCACAGCTGCGGTTTGTTTCCCGGCATGGCGATCCAGATGACCGCCATTGGAGAGGAGTCCGGCACCCTGGA
CCGGATGCTGGAAAAAGTCGCGAACCACTACGAGTCGGACGTCGACACCCTGGTCGATAACCTCACCAGCCTGATGGAGC
CGCTGATCATGGTTGTCCTGGGGGCCATTGTCGGCGCGCTGGTGATCGCGATGTACCTGCCGGTCTTTCAATTGGGTACG
GCCTTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
57.828 |
98.507 |
0.57 |
| pilC | Acinetobacter baylyi ADP1 |
50.758 |
98.507 |
0.5 |
| pilC | Acinetobacter baumannii D1279779 |
49.367 |
98.259 |
0.485 |
| pilC | Legionella pneumophila strain ERS1305867 |
48.363 |
98.756 |
0.478 |
| pilC | Thermus thermophilus HB27 |
38.366 |
100 |
0.386 |
| pilG | Neisseria gonorrhoeae MS11 |
40.157 |
94.776 |
0.381 |
| pilC | Vibrio cholerae strain A1552 |
38.52 |
97.512 |
0.376 |
| pilC | Vibrio campbellii strain DS40M4 |
37.879 |
98.507 |
0.373 |
| pilG | Neisseria meningitidis 44/76-A |
39.37 |
94.776 |
0.373 |