Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilC   Type   Machinery gene
Locus tag   QMK52_RS03140 Genome accession   NZ_CP125376
Coordinates   730372..731580 (+) Length   402 a.a.
NCBI ID   WP_194440117.1    Uniprot ID   A0A7S7S5U5
Organism   Pseudomonas sp. P9_2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 725372..736580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK52_RS03115 (QMK52_03115) - 725845..727998 (-) 2154 WP_005784691.1 DUF1631 domain-containing protein -
  QMK52_RS03120 (QMK52_03120) nadC 728244..729092 (+) 849 WP_005784689.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QMK52_RS03125 (QMK52_03125) - 729167..729472 (-) 306 WP_005784687.1 DUF6388 family protein -
  QMK52_RS03135 (QMK52_03135) - 729759..730172 (-) 414 WP_005784685.1 pilin -
  QMK52_RS03140 (QMK52_03140) pilC 730372..731580 (+) 1209 WP_194440117.1 type II secretion system F family protein Machinery gene
  QMK52_RS03145 (QMK52_03145) pilD 731577..732443 (+) 867 WP_194440116.1 prepilin peptidase Machinery gene
  QMK52_RS03150 (QMK52_03150) coaE 732440..733063 (+) 624 WP_032877844.1 dephospho-CoA kinase -
  QMK52_RS03155 (QMK52_03155) yacG 733060..733260 (+) 201 WP_005784677.1 DNA gyrase inhibitor YacG -
  QMK52_RS03160 (QMK52_03160) - 733257..733472 (-) 216 WP_003171680.1 hypothetical protein -
  QMK52_RS03165 (QMK52_03165) - 733539..734228 (-) 690 WP_005784673.1 energy-coupling factor ABC transporter permease -
  QMK52_RS03170 (QMK52_03170) - 734503..735132 (+) 630 WP_003188431.1 DUF1780 domain-containing protein -
  QMK52_RS03175 (QMK52_03175) - 735186..735359 (+) 174 WP_005784671.1 DUF3094 family protein -

Sequence


Protein


Download         Length: 402 a.a.        Molecular weight: 43754.29 Da        Isoelectric Point: 9.7686

>NTDB_id=831559 QMK52_RS03140 WP_194440117.1 730372..731580(+) (pilC) [Pseudomonas sp. P9_2]
MNDTSTIYAWEGINRKGRRVTGQTAGDSLALIKAQLRQQGICPERVCKKPRSRSAFTPRILPADIALFTRQLATLLKAGI
PLLQAFDIISEGFENPQVRELVKALKQQIASGNNLAAALRLHPRYFDDLYCNLVAAGEQAGALETLLERVAIHLEKSQQL
KARIKKAMTYPVAVLVVATLVSTVLLIHVVPQFQHLFAGVDSQLPGFTLGVIALSEFLQQAWWILVLGLVVGVGGLRHAY
RRYPGFRHCLQGHLLKAPLAGKLLQKTAVARYARTLSTTFAAGVPLVQALGSVAGAVGNDPFKQAIERMRHDVSTGMQLN
QSMHSCGLFPGMAIQMTAIGEESGTLDRMLEKVANHYESDVDTLVDNLTSLMEPLIMVVLGAIVGALVIAMYLPVFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=831559 QMK52_RS03140 WP_194440117.1 730372..731580(+) (pilC) [Pseudomonas sp. P9_2]
ATGAACGACACGTCAACGATCTATGCCTGGGAAGGTATCAACCGCAAAGGACGCAGGGTGACCGGGCAAACCGCTGGCGA
CAGCCTTGCGCTGATCAAGGCACAACTGCGCCAGCAAGGGATCTGCCCCGAGCGTGTGTGCAAGAAGCCTCGATCACGCT
CGGCTTTCACCCCGCGAATCCTGCCAGCCGATATCGCCCTGTTTACTCGCCAGTTGGCGACCTTGCTCAAAGCCGGCATC
CCGCTGCTGCAAGCCTTCGACATCATCAGTGAAGGTTTTGAAAACCCGCAGGTGCGTGAACTGGTCAAGGCGTTGAAACA
ACAGATCGCCAGCGGCAATAACCTGGCCGCAGCGCTACGCCTGCACCCGCGTTACTTCGATGACCTGTACTGCAACCTGG
TAGCTGCCGGAGAACAGGCCGGTGCTTTGGAAACCCTGCTGGAGCGCGTGGCAATTCATCTGGAAAAAAGCCAACAGCTC
AAAGCCAGGATCAAAAAAGCCATGACTTACCCTGTCGCAGTCCTGGTAGTCGCTACACTAGTCAGCACAGTGCTGTTGAT
ACACGTCGTGCCTCAGTTCCAGCATCTGTTTGCCGGGGTCGACAGCCAACTGCCCGGGTTTACCCTGGGGGTCATTGCCC
TGTCCGAGTTCTTGCAACAAGCGTGGTGGATACTCGTGCTGGGCCTGGTCGTGGGGGTGGGCGGGCTGCGCCACGCCTAC
CGCCGTTACCCTGGCTTTCGCCATTGTCTGCAAGGGCATTTGTTGAAAGCGCCCCTGGCAGGCAAACTGCTGCAAAAAAC
CGCCGTCGCCCGCTACGCCCGCACGCTTTCGACCACGTTTGCAGCGGGTGTCCCGCTGGTCCAGGCATTGGGCTCGGTAG
CCGGAGCCGTCGGCAATGACCCCTTCAAACAGGCAATCGAACGTATGCGCCACGATGTATCCACAGGCATGCAGTTGAAT
CAATCCATGCACAGCTGCGGTTTGTTTCCCGGCATGGCGATCCAGATGACCGCCATTGGAGAGGAGTCCGGCACCCTGGA
CCGGATGCTGGAAAAAGTCGCGAACCACTACGAGTCGGACGTCGACACCCTGGTCGATAACCTCACCAGCCTGATGGAGC
CGCTGATCATGGTTGTCCTGGGGGCCATTGTCGGCGCGCTGGTGATCGCGATGTACCTGCCGGTCTTTCAATTGGGTACG
GCCTTTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A7S7S5U5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.828

98.507

0.57

  pilC Acinetobacter baylyi ADP1

50.758

98.507

0.5

  pilC Acinetobacter baumannii D1279779

49.367

98.259

0.485

  pilC Legionella pneumophila strain ERS1305867

48.363

98.756

0.478

  pilC Thermus thermophilus HB27

38.366

100

0.386

  pilG Neisseria gonorrhoeae MS11

40.157

94.776

0.381

  pilC Vibrio cholerae strain A1552

38.52

97.512

0.376

  pilC Vibrio campbellii strain DS40M4

37.879

98.507

0.373

  pilG Neisseria meningitidis 44/76-A

39.37

94.776

0.373